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rifcsphigho2_01_scaffold_2386

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_2386_1
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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1..693
DNA (693bp) protein (231aa)
GTP-binding protein; K06944 Tax=RBG_13_Woesearchaeota_36_6_curated
GTPase; K06944 id=5044068 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
small GTP-binding protein
rifcsphigho2_01_scaffold_2386_2
Thermoanaerobacter wiegelii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

950..1963
DNA (1014bp) protein (338aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MSD9_9THEO rbh
phospho-2-dehydro-3-deoxyheptonate aldolase
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:AEM78533.1}; Flags: Precursor;; TaxID=697303 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; T
rifcsphigho2_01_scaffold_2386_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1965..3053
DNA (1089bp) protein (363aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] id=14425196 bin=bin1_lowGC species=Clostridium sp. CAG:264 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=CSP1_2_Dadabacteria
3-dehydroquinate synthase (EC:4.2.3.4)
rifcsphigho2_01_scaffold_2386_4
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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3055..4518
DNA (1464bp) protein (488aa)
eMB3004; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase (EC:1.1.1.25 4.2.1.10)
Similar to 3-dehydroquinate dehydratase / shikimate 5-dehydrogenase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0M3_9BACT
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00179162}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua
rifcsphigho2_01_scaffold_2386_5
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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4505..5761
DNA (1257bp) protein (419aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YJ92_9BACT rbh
rifcsphigho2_01_scaffold_2386_6
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

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5758..6267
DNA (510bp) protein (170aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9J4_GEODF
shikimate kinase Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
rifcsphigho2_01_scaffold_2386_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6270..7352
DNA (1083bp) protein (361aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YWG9_9BACT
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_01_scaffold_2386_8
CG_CPArch01-01, CG_CPArch01, Archaea

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7358..8188
DNA (831bp) protein (277aa)
Prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=CG_CPArch01-01
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CV30_METMJ
rifcsphigho2_01_scaffold_2386_9
GWC1_CPR2_41_48, CPR2, Bacteria

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8185..8994
DNA (810bp) protein (270aa)
prephenate dehydratase (EC:4.2.1.51)
P-protein id=2366964 bin=GWD1_TM7_39_7 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD1_TM7_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D2_39_7
P-protein {ECO:0000313|EMBL:KKS09514.1}; TaxID=1618344 species="Bacteria; candidate division CPR2.;" source="candidate division CPR2 bacterium GW2011_GWC1_41_48.;"
rifcsphigho2_01_scaffold_2386_10
CG_Woesearch_01, Woesearchaeota, Archaea

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8999..10519
DNA (1521bp) protein (507aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=CG_Woesearch_01
Phenylalanine--tRNA ligase alpha subunit id=5800822 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
phenylalanyl-tRNA synthetase subunit alpha
rifcsphigho2_01_scaffold_2386_11
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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10520..11293
DNA (774bp) protein (258aa)
sugar phosphate isomerase/epimerase Tax=CG_Aenigma_01
Xylose isomerase domain protein TIM barrel id=4935165 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Xylose isomerase domain-containing protein TIM barrel
rifcsphigho2_01_scaffold_2386_12
unknown

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11296..11475
DNA (180bp) protein (60aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2386_13
unknown

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11481..13022
DNA (1542bp) protein (514aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2386_14
CG_Woesearch_01, Woesearchaeota, Archaea

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13029..14687
DNA (1659bp) protein (553aa)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPR9_THELI id=5103639 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
phenylalanyl-tRNA synthetase subunit beta Tax=CG_Woesearch_01
Phenylalanine-tRNA ligase beta subunit
rifcsphigho2_01_scaffold_2386_15
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(14691..15197)
DNA (507bp) protein (169aa)
ribosomal protein L14; K02875 large subunit ribosomal protein L14e Tax=AR11
50S ribosomal protein L14e id=5800175 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L14
rifcsphigho2_01_scaffold_2386_16
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15348..15707)
DNA (360bp) protein (120aa)
50S ribosomal protein L34e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZE5_METFV
50S ribosomal protein L34e
50S ribosomal protein L34e {ECO:0000256|HAMAP-Rule:MF_00349}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothe
rifcsphigho2_01_scaffold_2386_17
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

15745..16236
DNA (492bp) protein (164aa)
Tax=AR11
rifcsphigho2_01_scaffold_2386_18
unknown

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comp(16245..16625)
DNA (381bp) protein (127aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2386_19

Not on your lists

comp(16671..17420)
DNA (750bp) protein (250aa)
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46823.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_2386_20
AR11, Woesearchaeaota, DPANN, Archaea

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comp(17501..18916)
DNA (1416bp) protein (472aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=AR11
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsphigho2_01_scaffold_2386_21

Not on your lists


comp(18947..19402)
DNA (456bp) protein (152aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
rifcsphigho2_01_scaffold_2386_22
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


comp(19404..19847)
DNA (444bp) protein (148aa)
rpl30p; 50S ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=CG_Woesearch_01
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30
rifcsphigho2_01_scaffold_2386_23
AR11, Woesearchaeaota, DPANN, Archaea

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comp(19849..20736)
DNA (888bp) protein (296aa)
30S ribosomal protein S5 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036370A2
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=AR11
30S ribosomal protein S5
rifcsphigho2_01_scaffold_2386_24

Not on your lists


comp(20729..21307)
DNA (579bp) protein (193aa)
50S ribosomal protein L18P n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AM76_METOI
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
rifcsphigho2_01_scaffold_2386_25

Not on your lists

comp(21294..21752)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rpl19e; 50S ribosomal protein L19
rifcsphigho2_01_scaffold_2386_26

Not on your lists


comp(21754..22320)
DNA (567bp) protein (189aa)
50S ribosomal protein L32; K02912 large subunit ribosomal protein L32e id=5042318 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO46816.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rpl32e; 50S ribosomal protein L32
rifcsphigho2_01_scaffold_2386_27

Not on your lists


comp(22317..22880)
DNA (564bp) protein (188aa)
Large subunit ribosomal protein L6 {ECO:0000313|EMBL:AJS12220.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6 id=5800047 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L6
rifcsphigho2_01_scaffold_2386_28

Not on your lists


comp(22881..23270)
DNA (390bp) protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
rifcsphigho2_01_scaffold_2386_29
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(23278..23508)
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
rifcsphigho2_01_scaffold_2386_30

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comp(23511..24029)
DNA (519bp) protein (173aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
Displaying items 1-30 of 44 in total

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