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rifcsphigho2_01_scaffold_4278_11

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Woesearchaeota_48_23

near complete RP 33 / 55 MC: 6 BSCG 6 / 51 MC: 1 ASCG 32 / 38
Location: comp(9944..10387)

Top 3 Functional Annotations

Value Algorithm Source
NMD protein affecting ribosome stability and mRNA decay n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U9C7_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 34.8
  • Coverage: 141.0
  • Bit_score: 72
  • Evalue 3.90e-10
NMD protein affecting ribosome stability and mRNA decay {ECO:0000313|EMBL:EMR75375.1}; TaxID=1242866 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales arc similarity UNIPROT
DB: UniProtKB
  • Identity: 34.8
  • Coverage: 141.0
  • Bit_score: 72
  • Evalue 5.40e-10

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Taxonomy

Thermoplasmatales archaeon SCGC AB-540-F20 → Thermoplasmatales → Thermoplasmata → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 444
ATGGAAGGCAAGCATCCGCTGTACTATGAGGCAATTCTGCAGCTGCGGGATATTGTACCCGAGATAGAAGAGTTCGCTTTCGCTGCGATCAAAAAAAAAGGCGTGCCCATAACAAGAATTAAAAAAGTGCAAGGCGGCATTGATATTTACCTTGCTGATAAGAGTGTTGCCCGAACGATCGGCAAGCAGCTGCAGGAGCGCTTTGGCGGCGAGCATAAAGTGACCCAGTCCGTTTATGGCATGAAAGGCGGAAACACCATCTATCGCATTACGATTCTCTTCCGGGGGCTGCCGTTCCGGAAAGGCCAGCAGGTGCTCTATAAAGGGGAACCCTGTACGGTGCTGCTGCTCGGCAAAGACATCTTTCTCCGGCAGGATGCAACGGGGAAGAAAATGCACGTGAAGTTTAAGGATGCGGCGGGGATAAAGAGAAGAAAAGAATAA
PROTEIN sequence
Length: 148
MEGKHPLYYEAILQLRDIVPEIEEFAFAAIKKKGVPITRIKKVQGGIDIYLADKSVARTIGKQLQERFGGEHKVTQSVYGMKGGNTIYRITILFRGLPFRKGQQVLYKGEPCTVLLLGKDIFLRQDATGKKMHVKFKDAAGIKRRKE*