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rifcsphigho2_01_scaffold_8222

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_8222_1
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

212..829
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000366B2E8
hypothetical protein Tax=CG_Pacearch_05
rifcsphigho2_01_scaffold_8222_2
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(1060..3387)
DNA (2328bp) protein (776aa)
DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RBG_13_Pacearchaeota_33_26_curated
DNA topoisomerase 1 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=TOP1_PYRHO id=5103194 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase 1
rifcsphigho2_01_scaffold_8222_3

Not on your lists

3890..4279
DNA (390bp) protein (130aa)
Marine sediment metagenome DNA, contig: S01H4_L01416 {ECO:0000313|EMBL:GAG54531.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_01_scaffold_8222_4

Not on your lists

comp(4323..5192)
DNA (870bp) protein (290aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52847.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rifcsphigho2_01_scaffold_8222_5
unknown

Not on your lists

5292..5504
DNA (213bp) protein (71aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8222_6
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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5494..6447
DNA (954bp) protein (318aa)
RNA-directed DNA polymerase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NSP1_GRAMM
RNA-directed DNA polymerase
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_8222_7

Not on your lists

comp(6612..7265)
DNA (654bp) protein (218aa)
Metallophosphoesterase {ECO:0000313|EMBL:KHO49724.1}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
Metallophosphoesterase id=5799698 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Metallophosphoesterase
rifcsphigho2_01_scaffold_8222_8
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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7320..8087
DNA (768bp) protein (256aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_8222_9
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

8084..8401
DNA (318bp) protein (106aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_8222_10

Not on your lists

comp(8411..9109)
DNA (699bp) protein (233aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] id=5048456 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.89 {ECO:0000256|HAMAP-Rule:MF_01139};; Undecaprenyl diphosphate synt
Tritrans,polycis-undecaprenyl-diphosphate synthase, geranylgeranyl-diphosphate specific
rifcsphigho2_01_scaffold_8222_11

Not on your lists

comp(9583..10899)
DNA (1317bp) protein (439aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] id=5046823 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
seryl-tRNA synthetase (EC:6.1.1.11)
rifcsphigho2_01_scaffold_8222_12
CG_Pacearch_03, Pacearchaeota, Archaea

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11613..11879
DNA (267bp) protein (89aa)
MarR family transcriptional regulator Tax=CG_Pacearch_03
regulatory protein MarR id=5046824 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsphigho2_01_scaffold_8222_13

Not on your lists

comp(12488..12979)
DNA (492bp) protein (164aa)
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase {ECO:0000313|EMBL:AIA17013.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Dihydrofolate reductase-thymidylate synthase id=4684789 bin=GWA2_OP3_53_43 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
rifcsphigho2_01_scaffold_8222_14
Halorubrum sp. AJ67, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13186..14217)
DNA (1032bp) protein (344aa)
Thymidylate synthase {ECO:0000313|EMBL:CDK38297.1}; EC=2.1.1.45 {ECO:0000313|EMBL:CDK38297.1};; TaxID=1173487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;
thymidylate synthase (EC:2.1.1.45)
thymidylate synthase n=1 Tax=Halorubrum sp. T3 RepID=UPI00036946BE
rifcsphigho2_01_scaffold_8222_15
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(14614..14922)
DNA (309bp) protein (103aa)
DNA-directed RNA polymerase, subunit m (EC:2.7.7.6)
transcription termination factor Tfs (EC:2.7.7.6); K03057 transcription elongation factor id=18248384 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
transcription termination factor Tfs; K03057 transcription elongation factor Tax=CG_Pacearch_05
rifcsphigho2_01_scaffold_8222_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(15335..15958)
DNA (624bp) protein (208aa)
hypothetical protein
id=5103328 Tax=RBG_13_Pacearchaeota_36_9_curated
id=5103328 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_01_scaffold_8222_17
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

16097..16396
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376420B
hypothetical protein
hypothetical protein Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsphigho2_01_scaffold_8222_18
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

16786..18771
DNA (1986bp) protein (662aa)
ATPase AAA (EC:3.6.1.3); K13525 transitional endoplasmic reticulum ATPase Tax=CG_Pacearch_05
AAA family ATPase, CDC48 subfamily n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D4W9_METSW id=5103197 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
AAA family ATPase, CDC48 subfamily
rifcsphigho2_01_scaffold_8222_19
GWA2_OD1_45_13, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

18812..19498
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Bacillus cereus BAG2X1-2 RepID=J8NLL2_BACCE
UbiE/COQ5-like methyltransferase Tax=GWA2_OD1_45_13
hypothetical protein
rifcsphigho2_01_scaffold_8222_20
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(19504..20403)
DNA (900bp) protein (300aa)
methionine aminopeptidase (EC:3.4.11.18) Tax=CG_Pacearch_05
methionine aminopeptidase, type II (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=5048875 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
methionine aminopeptidase
rifcsphigho2_01_scaffold_8222_21

Not on your lists

20550..21245
DNA (696bp) protein (232aa)
hypothetical protein; K08984 putative membrane protein id=5048693 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45356.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
integral membrane protein
rifcsphigho2_01_scaffold_8222_22
unknown

Not on your lists

comp(21475..21999)
DNA (525bp) protein (175aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8222_23
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(22017..22502)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S2T6_FERPA
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsphigho2_01_scaffold_8222_24
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

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comp(22499..23485)
DNA (987bp) protein (329aa)
RNA methylase (EC:2.1.1.29) Tax=RBG_16_Pacearchaeota_35_8_curated
RNA methylase, NOL1/NOP2/sun family n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S2T5_FERPA id=5103608 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
RNA methylase, NOL1/NOP2/sun family
rifcsphigho2_01_scaffold_8222_25

Not on your lists

comp(23488..23820)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7TE55_9EURY id=5103685 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KHO54848.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
hypothetical protein
rifcsphigho2_01_scaffold_8222_26

Not on your lists

comp(23826..24155)
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO54849.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
Putative uncharacterized protein id=3605381 bin=GWC2_Elusimicrobia_51_8 species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
hypothetical protein
rifcsphigho2_01_scaffold_8222_27
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(24202..26700)
DNA (2499bp) protein (833aa)
DNA polymerase (EC:2.7.7.7); K02319 DNA polymerase I [EC:2.7.7.7] Tax=CG_Pacearch_05
DNA polymerase n=3 Tax=Pyrococcus RepID=DPOL_PYRFU id=5103201 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA polymerase
rifcsphigho2_01_scaffold_8222_28
unknown

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26814..27296
DNA (483bp) protein (161aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8222_29
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(27299..27661)
DNA (363bp) protein (121aa)
Probable ribonuclease VapC n=1 Tax=Thermococcus sp. AM4 RepID=B7R4X0_9EURY id=5103339 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
putative ribonuclease VapC
rifcsphigho2_01_scaffold_8222_30
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(27654..27887)
DNA (234bp) protein (78aa)
Uncharacterized protein Tax=RBG_13_Pacearchaeota_36_9_curated
Uncharacterized protein id=4379348 bin=PER_GWC2_41_7 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Displaying items 1-30 of 35 in total

View Taxonomy