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rifcsplowo2_01_scaffold_4195

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_4195_1
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

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2..88
DNA (87bp) protein (29aa)
Rhodopirellula transposase family protein {ECO:0000313|EMBL:KKR95687.1}; TaxID=1618997 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
rifcsplowo2_01_scaffold_4195_2

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85..399
DNA (315bp) protein (105aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL12400.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rifcsplowo2_01_scaffold_4195_3

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598..1563
DNA (966bp) protein (322aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5042300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
rifcsplowo2_01_scaffold_4195_4

Not on your lists


1560..2366
DNA (807bp) protein (269aa)
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12340.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e id=5041760 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L4
rifcsplowo2_01_scaffold_4195_5
CG_Woesearch_02, Woesearchaeota, Archaea

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2372..2623
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=CG_Woesearch_02
50S ribosomal protein L23P
rifcsplowo2_01_scaffold_4195_6

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2672..3385
DNA (714bp) protein (238aa)
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=5042303 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl2p; 50S ribosomal protein L2
rifcsplowo2_01_scaffold_4195_7

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3391..3774
DNA (384bp) protein (128aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12488.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19 id=5800060 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S19P
rifcsplowo2_01_scaffold_4195_8

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3777..4337
DNA (561bp) protein (187aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl22p; 50S ribosomal protein L22P
rifcsplowo2_01_scaffold_4195_9

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4334..5215
DNA (882bp) protein (294aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GU16_9ZZZZ
30S ribosomal protein S3 {ECO:0000313|EMBL:AGT99674.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
30S ribosomal protein S3
rifcsplowo2_01_scaffold_4195_10

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5212..5421
DNA (210bp) protein (70aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5042307 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L29
rifcsplowo2_01_scaffold_4195_11

Not on your lists

5414..5722
DNA (309bp) protein (103aa)
translation initiation factor SUI1; K03113 translation initiation factor 1 id=5041767 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
Translation initiation factor SUI1-related protein
rifcsplowo2_01_scaffold_4195_12
unknown

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5719..5949
DNA (231bp) protein (77aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4195_13

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5991..6320
DNA (330bp) protein (110aa)
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12347.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps17p; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=5041768 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S17
rifcsplowo2_01_scaffold_4195_14

Not on your lists


6307..6708
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_4195_15

Not on your lists


6721..7101
DNA (381bp) protein (127aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5046850 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L24
rifcsplowo2_01_scaffold_4195_16
AR11, Woesearchaeaota, DPANN, Archaea

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7106..7792
DNA (687bp) protein (229aa)
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=AR11
rps4e; 30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e id=5041771 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S4
rifcsplowo2_01_scaffold_4195_17

Not on your lists


7789..8298
DNA (510bp) protein (170aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsplowo2_01_scaffold_4195_18
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

8295..8525
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=CG_Woesearch_02
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_4195_19

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8533..8922
DNA (390bp) protein (130aa)
30S ribosomal protein S8 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000371BB10
Small subunit ribosomal protein S8 {ECO:0000313|EMBL:KHO51228.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S8P
rifcsplowo2_01_scaffold_4195_20
AR15, Woesearchaeaota, DPANN, Archaea

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8925..9479
DNA (555bp) protein (185aa)
50S ribosomal protein L6 id=5800047 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L6 Tax=AR15
rpl6p; 50S ribosomal protein L6
rifcsplowo2_01_scaffold_4195_21
CG_Woesearch_02, Woesearchaeota, Archaea

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9476..10042
DNA (567bp) protein (189aa)
50S ribosomal protein L32; K02912 large subunit ribosomal protein L32e id=5042318 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ribosomal protein L32e; K02912 large subunit ribosomal protein L32e Tax=CG_Woesearch_02
rpl32e; 50S ribosomal protein L32
rifcsplowo2_01_scaffold_4195_22

Not on your lists

10039..10485
DNA (447bp) protein (149aa)
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L19e id=5800045 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L19e
rifcsplowo2_01_scaffold_4195_23
Methanococcus voltae, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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10482..11060
DNA (579bp) protein (193aa)
50S ribosomal protein L18P n=1 Tax=Methanococcus voltae (strain ATCC BAA-1334 / A3) RepID=D7DU91_METV3
50S ribosomal protein L18P/L5E
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=456320 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus
rifcsplowo2_01_scaffold_4195_24

Not on your lists


11057..11830
DNA (774bp) protein (258aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5042321 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5P, small subunit ribosomal protein S5 {ECO:0000313|EMBL:KHO46819.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
30S ribosomal protein S5
rifcsplowo2_01_scaffold_4195_25
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists


11827..12255
DNA (429bp) protein (143aa)
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30P Tax=AR15
50S ribosomal protein L30P
rifcsplowo2_01_scaffold_4195_26

Not on your lists


12257..12700
DNA (444bp) protein (148aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
rifcsplowo2_01_scaffold_4195_27

Not on your lists

12702..14117
DNA (1416bp) protein (472aa)
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_4195_28

Not on your lists

14117..14872
DNA (756bp) protein (252aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO51237.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_4195_29
unknown

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15016..15282
DNA (267bp) protein (89aa)
50S ribosomal protein L34e n=1 Tax=Thermogladius cellulolyticus (strain 1633) RepID=I3TDD7_THEC1
50S ribosomal protein L34e
rifcsplowo2_01_scaffold_4195_30

Not on your lists

15323..15727
DNA (405bp) protein (135aa)
Large subunit ribosomal protein L14e {ECO:0000313|EMBL:KHO49049.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
50S ribosomal protein L14e id=5800175 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ribosomal protein L14
Displaying items 1-30 of 50 in total

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