ggKbase home page

rifcsplowo2_01_scaffold_8062

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_8062_1
unknown

Not on your lists

120..362
DNA (243bp) protein (81aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8062_2
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(336..1547)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon E-plasma RepID=T0MPX7_9EURY
Rhodopirellula transposase family protein {ECO:0000313|EMBL:KKR95687.1}; TaxID=1618997 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
transposase
rifcsplowo2_01_scaffold_8062_3
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

1747..3099
DNA (1353bp) protein (451aa)
Succinate-semialdehyde dehydrogenase [NAD] (EC:1.2.1.24 1.2.1.16)
Similar to succinate-semialdehyde dehydrogenase [NADP+] id=2103045 bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Succinate-semialdehyde dehydrogenase [NAD]/Succinate-semialdehyde dehydrogenase [NADP+] Tax=GWC2_Nitrospirae_57_13_curated
rifcsplowo2_01_scaffold_8062_4
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

3096..4733
DNA (1638bp) protein (546aa)
acetolactate synthase; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=GWC2_Nitrospirae_57_13_curated
Similar to acetolactate synthase id=4736580 bin=GWC2_Nitrospirae_57_13 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
acetolactate synthase
rifcsplowo2_01_scaffold_8062_5
unknown

Not on your lists

4751..4864
DNA (114bp) protein (38aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8062_6
GWA2_OD1_46_39_partial, Parcubacteria, Bacteria

Not on your lists

comp(4869..5462)
DNA (594bp) protein (198aa)
DSBA oxidoreductase family protein {ECO:0000313|EMBL:KKU39794.1}; TaxID=1618836 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_39.;"
hypothetical protein
nhaA2; putative lipoprotein id=5241601 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_8062_7

Not on your lists

comp(5464..6195)
DNA (732bp) protein (244aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50907.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
DSBA oxidoreductase id=5046612 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DSBA oxidoreductase
rifcsplowo2_01_scaffold_8062_8
R_RIF_OD1_06_39_25, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(6303..6806)
DNA (504bp) protein (168aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_06_39_25_curated
hypothetical protein id=5049638 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsplowo2_01_scaffold_8062_9
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(6807..7178)
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PK80_9ZZZZ
hypothetical protein Tax=CG_Pacearch_05
hypothetical protein
rifcsplowo2_01_scaffold_8062_10
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(7206..7931)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036D14DC
transcriptional regulator TrmB Tax=RBG_13_Pacearchaeota_36_9_curated
Transcriptional regulator, TrmB
rifcsplowo2_01_scaffold_8062_11
unknown

Not on your lists

8002..8553
DNA (552bp) protein (184aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8062_12
GWA1_OD1_36_12, Parcubacteria, Bacteria

Not on your lists

8640..11186
DNA (2547bp) protein (849aa)
Endonuclease n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WWI3_MYCKA
UPF0051 protein Rv1461/MT1508 Tax=GWA1_OD1_36_12
endonuclease
rifcsplowo2_01_scaffold_8062_13

Not on your lists

11183..12286
DNA (1104bp) protein (368aa)
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD id=5046303 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Fe-S cluster assembly protein SufD {ECO:0000313|EMBL:KHO46104.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
SufBD protein
rifcsplowo2_01_scaffold_8062_14
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

12286..12573
DNA (288bp) protein (96aa)
Putative uncharacterized protein id=4759191 bin=PER_GWC2_41_7 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Putative uncharacterized protein Tax=AR15
aromatic ring hydroxylating enzyme
rifcsplowo2_01_scaffold_8062_15

Not on your lists

12576..13778
DNA (1203bp) protein (401aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506};; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) RepID=E0RQN6_SPITD
rifcsplowo2_01_scaffold_8062_16

Not on your lists

13775..14473
DNA (699bp) protein (233aa)
Threonyl/alanyl tRNA synthetase SAD n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L5H7_KORCO
Uncharacterized protein {ECO:0000313|EMBL:KKM69383.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
threonyl/alanyl tRNA synthetase SAD
rifcsplowo2_01_scaffold_8062_17
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

14470..14841
DNA (372bp) protein (124aa)
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins Tax=CG_Pacearch_05
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins id=5090829 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
NifU family SUF system FeS assembly protein
rifcsplowo2_01_scaffold_8062_18
CG_Elusi_01, Elusimicrobia, Elusimicrobia, Bacteria

Not on your lists

comp(15443..16684)
DNA (1242bp) protein (414aa)
Argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=CG_Elusi_01
Argininosuccinate lyase id=2148332 bin=GWB2_Elusimicrobium_63_22 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
argininosuccinate lyase
rifcsplowo2_01_scaffold_8062_19
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16681..17583)
DNA (903bp) protein (301aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150};; N-acetyl-glutamate semiald
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I4Z9_METCZ
rifcsplowo2_01_scaffold_8062_20
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(17576..18736)
DNA (1161bp) protein (387aa)
acetylornithine/succinyldiaminopimelate aminotransferase (EC:2.6.1.11); K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] Tax=RBG_16_RIF03_38_10_curated
acetylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYF0_METFV
rifcsplowo2_01_scaffold_8062_21
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18733..20001)
DNA (1269bp) protein (423aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000313|EMBL:AJC47804.1}; EC=2.7.2.8 {ECO:0000313|EMBL:AJC47804.1};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae;
acetylglutamate kinase n=1 Tax=Xanthomonas sacchari RepID=UPI00026315CD
rifcsplowo2_01_scaffold_8062_22
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(19998..20978)
DNA (981bp) protein (327aa)
acetylornithine deacetylase (EC:3.5.1.16); K01438 acetylornithine deacetylase [EC:3.5.1.16] Tax=RBG_13_OP8X_37_8_curated
Peptidase M20 n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LKM5_HALO1
peptidase M20
rifcsplowo2_01_scaffold_8062_23
CG_Wirth_01, Wirthbacteria, Bacteria

Not on your lists

comp(20975..22144)
DNA (1170bp) protein (390aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] Tax=CG_Wirth_01
argininosuccinate synthase n=1 Tax=Kangiella aquimarina RepID=UPI00035F3F38 rbh
argininosuccinate synthase
rifcsplowo2_01_scaffold_8062_24
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(22141..23136)
DNA (996bp) protein (332aa)
argF; N-acetylornithine carbamoyltransferase (EC:2.1.3.9); K09065 N-acetylornithine carbamoyltransferase [EC:2.1.3.9] Tax=RBG_16_RIF03_38_10_curated
N-acetylornithine carbamoyltransferase n=1 Tax=Kangiella aquimarina RepID=UPI000368F023 rbh
N-acetylornithine carbamoyltransferase
rifcsplowo2_01_scaffold_8062_25

Not on your lists

23382..24011
DNA (630bp) protein (210aa)
hypothetical protein id=5048447 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45481.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_8062_26
unknown

Not on your lists

24139..24369
DNA (231bp) protein (77aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8062_27
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(24259..24924)
DNA (666bp) protein (222aa)
PP-loop domain protein Tax=AR11
NEQ523 id=5800096 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PP-loop domain-containing protein
rifcsplowo2_01_scaffold_8062_28
unknown

Not on your lists

comp(24925..24999)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 28 items

View Taxonomy