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rifcsplowo2_01_scaffold_8807

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_8807_1
unknown

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66..713
-----------------
DNA (648bp)
protein (216aa)
50S ribosomal protein L1 n=1 Tax=Methanococcus thermolithotrophicus RepID=RL1_METTL id=5102902 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L1 n=1 Tax=Methanococcus thermolithotrophicus RepID=RL1_METTL Tax=AR20
50S ribosomal protein L1
rifcsplowo2_01_scaffold_8807_2

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710..1663
-----------------
DNA (954bp)
protein (318aa)
Ribosomal protein L10 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VVQ4_9EURY id=5102903 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_8807_3
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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1673..1960
-----------------
DNA (288bp)
protein (96aa)
50S ribosomal protein L12 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WM01_9EURY
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
rpl12p; 50S ribosomal protein L12
rifcsplowo2_01_scaffold_8807_4

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1917..2849
-----------------
DNA (933bp)
protein (311aa)
Uncharacterized protein (Fragment) n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV32_9EURY id=5102905 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62186.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_8807_5

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2859..3314
-----------------
DNA (456bp)
protein (152aa)
Putative small multi-drug export n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R1X1_SPISS id=5102906 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62187.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_8807_6

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3377..5167
-----------------
DNA (1791bp)
protein (597aa)
hypothetical protein
id=5102909 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62190.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_8807_7
unknown

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5259..5414
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_8
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(5575..7059)
-----------------
DNA (1485bp)
protein (495aa)
carboxypeptidase Taq (EC:3.4.17.19)
thermostable carboxypeptidase 1 (EC:3.4.17.19); K01299 carboxypeptidase Taq [EC:3.4.17.19] id=5241307 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Zn-dependent carboxypeptidase Tax=CG_Pacearch_05
rifcsplowo2_01_scaffold_8807_9
unknown

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comp(7277..7783)
-----------------
DNA (507bp)
protein (169aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_10
CG_Pacearch_05, Pacearchaeota, Archaea

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7832..10750
-----------------
DNA (2919bp)
protein (973aa)
BSCG--tRNA--synthetase--leucyl
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=CG_Pacearch_05
Leucine--tRNA ligase n=1 Tax=uncultured bacterium RepID=K1YJW8_9BACT
Leucine-tRNA ligase
rifcsplowo2_01_scaffold_8807_11
unknown

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comp(10752..11006)
-----------------
DNA (255bp)
protein (85aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_12
CG_Pacearch_03, Pacearchaeota, Archaea

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11095..11541
-----------------
DNA (447bp)
protein (149aa)
Putative uncharacterized protein Tax=CG_Pacearch_03
rifcsplowo2_01_scaffold_8807_13
unknown

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11621..11800
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(11781..12407)
-----------------
DNA (627bp)
protein (209aa)
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein id=5043730 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_8807_15
unknown

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12628..13905
-----------------
DNA (1278bp)
protein (426aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_16
unknown

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13902..14093
-----------------
DNA (192bp)
protein (64aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_17
unknown

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comp(14296..15453)
-----------------
DNA (1158bp)
protein (386aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HKD5_PYRSN id=5102913 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HKD5_PYRSN Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_8807_18
AR15, Woesearchaeaota, DPANN, Archaea

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15525..15932
-----------------
DNA (408bp)
protein (136aa)
Uncharacterized protein id=5799545 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein Tax=AR15
hypothetical protein
rifcsplowo2_01_scaffold_8807_19
unknown

Not on your lists

16188..16436
-----------------
DNA (249bp)
protein (83aa)
DNA replication and repair protein RadC n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U4R8_9EURY id=5103858 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA replication and repair protein RadC n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U4R8_9EURY Tax=AR20
DNA replication and repair protein RadC
rifcsplowo2_01_scaffold_8807_20

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16433..16858
-----------------
DNA (426bp)
protein (142aa)
DNA replication and repair protein RadC n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U4R8_9EURY id=5103077 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA replication and repair protein RadC
DNA replication and repair protein RadC {ECO:0000313|EMBL:AJF62358.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_8807_21
AR20, Woesearchaeaota, DPANN, Archaea

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comp(17462..17860)
-----------------
DNA (399bp)
protein (133aa)
hypothetical protein
id=5103246 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsplowo2_01_scaffold_8807_22
unknown

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comp(17914..18177)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_23

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comp(18170..18739)
-----------------
DNA (570bp)
protein (190aa)
DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q0P7_9FIRM id=5103582 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S12241 {ECO:0000313|EMBL:GAG07045.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
DNA polymerase III epsilon subunit-like protein 3'-5' exonuclease
rifcsplowo2_01_scaffold_8807_24
GWA2_OD1_39_24, Falkowbacteria, Parcubacteria, Bacteria

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comp(18944..19282)
-----------------
DNA (339bp)
protein (113aa)
Putative uncharacterized protein Tax=GWA2_OD1_39_24
rifcsplowo2_01_scaffold_8807_25
CG_Pacearch_06, Pacearchaeota, Archaea

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19363..21093
-----------------
DNA (1731bp)
protein (577aa)
BSCG--tRNA--synthetase--alanyl
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=CG_Pacearch_06
Alanine--tRNA ligase n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RSZ5_SPHGB id=5102916 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Alanine-tRNA ligase
rifcsplowo2_01_scaffold_8807_26
unknown

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comp(21133..21495)
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_27

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comp(21488..21916)
-----------------
DNA (429bp)
protein (143aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037102DF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO54634.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifcsplowo2_01_scaffold_8807_28
unknown

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21958..22185
-----------------
DNA (228bp)
protein (76aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8807_29
unknown

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22263..23078
-----------------
DNA (816bp)
protein (272aa)
Transcription factor E n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HND9_PYRSN id=5102919 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Transcription factor E n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HND9_PYRSN Tax=AR20
Transcription factor E
rifcsplowo2_01_scaffold_8807_30
unknown

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comp(23349..23570)
-----------------
DNA (222bp)
protein (74aa)

This feature has no annotations

Displaying items 1-30 of 38 in total

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