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rifcsplowo2_01_scaffold_19359

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_19359_1
AR9, Woesearchaeaota, DPANN, Archaea

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1..240
DNA (240bp) protein (80aa)
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=AR9
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037CA4E5
Phenylalanine-tRNA ligase alpha subunit
rifcsplowo2_01_scaffold_19359_2

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242..1474
DNA (1233bp) protein (411aa)
Phenylalanyl-tRNA synthetase beta chain {ECO:0000313|EMBL:KHO50510.1}; EC=6.1.1.20 {ECO:0000313|EMBL:KHO50510.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=5041804 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Phenylalanine-tRNA ligase beta subunit
rifcsplowo2_01_scaffold_19359_3

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1458..1880
DNA (423bp) protein (141aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284};
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPR9_THELI id=5103639 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Suspect SCG annotation. See neighboring gene [rifcsplowo2_01_scaffold_19359_2].
Phenylalanine-tRNA ligase beta subunit
rifcsplowo2_01_scaffold_19359_4
unknown

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comp(1894..2859)
DNA (966bp) protein (322aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19359_5

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comp(2918..3301)
DNA (384bp) protein (128aa)
Large subunit ribosomal protein L14e {ECO:0000313|EMBL:KHO49049.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
50S ribosomal protein L14; K02875 large subunit ribosomal protein L14e id=5042328 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14
rifcsplowo2_01_scaffold_19359_6
Methanothermobacter thermautotrophicus, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(3298..3570)
DNA (273bp) protein (91aa)
50S ribosomal protein L34e n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=RL34_METTH
rpl34e; 50S ribosomal protein L34
50S ribosomal protein L34e; TaxID=187420 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter thermautotrophicu
rifcsplowo2_01_scaffold_19359_7
unknown

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comp(3716..4444)
DNA (729bp) protein (243aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19359_8
unknown

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comp(4401..5678)
DNA (1278bp) protein (426aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19359_9
AR4, Woesearchaeaota, DPANN, Archaea

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comp(5736..5978)
DNA (243bp) protein (81aa)
coiled-coil Tax=AR4
coiled-coil id=5043714 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_19359_10
unknown

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comp(6078..6218)
DNA (141bp) protein (47aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19359_11

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comp(6196..6726)
DNA (531bp) protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51714.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
hypothetical protein id=5043713 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_19359_12

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comp(6896..7660)
DNA (765bp) protein (255aa)
hypothetical protein
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46823.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_19359_13
unknown

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7785..8222
DNA (438bp) protein (146aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19359_14

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comp(8261..8902)
DNA (642bp) protein (214aa)
Protein translocase subunit SecY n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB98_METSL id=5103275 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_19359_15
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9061..9582)
DNA (522bp) protein (174aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=AR9
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_19359_16

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comp(9588..9974)
DNA (387bp) protein (129aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
ribosomal protein L15P Rpl15p
50S ribosomal protein L27; K02876 large subunit ribosomal protein L15 id=5046862 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_01_scaffold_19359_17
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(10010..10561)
DNA (552bp) protein (184aa)
rpl30p; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=AR9
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl30p; 50S ribosomal protein L30
rifcsplowo2_01_scaffold_19359_18
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(10564..11373)
DNA (810bp) protein (270aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=AR9
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
rifcsplowo2_01_scaffold_19359_19

Not on your lists


comp(11453..12010)
DNA (558bp) protein (186aa)
50S ribosomal protein L18P n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KST2_ARCVS
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
rifcsplowo2_01_scaffold_19359_20
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(12067..12531)
DNA (465bp) protein (155aa)
50S ribosomal protein L19; K02885 large subunit ribosomal protein L19e Tax=AR9
50S ribosomal protein L19e id=5800045 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L19e
rifcsplowo2_01_scaffold_19359_21

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comp(12528..13142)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037197A6
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO50239.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
ribosomal protein L32e
rifcsplowo2_01_scaffold_19359_22

Not on your lists


comp(13152..13691)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F6817
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsplowo2_01_scaffold_19359_23

Not on your lists


comp(13724..14113)
DNA (390bp) protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
rifcsplowo2_01_scaffold_19359_24

Not on your lists

comp(14127..14357)
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46813.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_19359_25
AR9, Woesearchaeaota, DPANN, Archaea

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comp(14377..14898)
DNA (522bp) protein (174aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=AR9
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsplowo2_01_scaffold_19359_26
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(14940..15647)
DNA (708bp) protein (236aa)
ribosomal protein S4E, central domain protein; K02987 small subunit ribosomal protein S4e Tax=AR9
rps4e; 30S ribosomal protein S4e
rps4e; 30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e id=5041771 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_19359_27

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comp(15644..16084)
DNA (441bp) protein (147aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5042312 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl24p; 50S ribosomal protein L24
rifcsplowo2_01_scaffold_19359_28

Not on your lists


comp(16133..16534)
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_19359_29

Not on your lists


comp(16531..16854)
DNA (324bp) protein (108aa)
30S ribosomal protein S17P n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY id=5103261 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P
rifcsplowo2_01_scaffold_19359_30
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(16944..17198)
DNA (255bp) protein (85aa)
ribonuclease P, Rpp29; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] Tax=AR9
Ribonuclease P, Rpp29 (EC:3.1.26.5)
Ribonuclease P protein component 1 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMQ5_METZD
Displaying items 1-30 of 37 in total

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