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rifcsplowo2_01_scaffold_12689

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_12689_1
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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151..1380
DNA (1230bp) protein (410aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:
CCA-adding enzyme n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WSV3_9EURY
tRNA nucleotidyltransferase CCA-adding enzyme
rifcsplowo2_01_scaffold_12689_2
unknown

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comp(1373..1690)
DNA (318bp) protein (106aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12689_3
unknown

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comp(1638..1910)
DNA (273bp) protein (91aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12689_4
unknown

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2031..2384
DNA (354bp) protein (118aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12689_5
unknown

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2595..3143
DNA (549bp) protein (183aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12689_6
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(3453..4106)
DNA (654bp) protein (218aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54237.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein; K03975 membrane-associated protein id=24413780 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
rifcsplowo2_01_scaffold_12689_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(4170..4955)
DNA (786bp) protein (262aa)
hypothetical protein Tax=CG_Woesearch_02
Fibronectin-binding protein id=5800653 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_12689_8

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5381..6067
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000381BFF6
Cell wall surface anchor family protein {ECO:0000313|EMBL:KHO55611.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsplowo2_01_scaffold_12689_9
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6355..6585)
DNA (231bp) protein (77aa)
snRNP Sm-like protein; K04796 small nuclear ribonucleoprotein Tax=RBG_13_Woesearchaeota_36_6_curated
Sm ribonucleoprotein-like protein; K04796 small nuclear ribonucleoprotein id=5047450 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Like-Sm ribonucleoprotein core
rifcsplowo2_01_scaffold_12689_10
CG_Woesearch_01, Woesearchaeota, Archaea

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6680..7240
DNA (561bp) protein (187aa)
hypothetical protein Tax=CG_Woesearch_01
Putative uncharacterized protein id=5800314 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
haloacid dehalogenase
rifcsplowo2_01_scaffold_12689_11

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7271..7843
DNA (573bp) protein (191aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL93349.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
metal dependent phosphohydrolase; K07023 putative hydrolases of HD superfamily id=18248014 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
metal dependent phosphohydrolase
rifcsplowo2_01_scaffold_12689_12
unknown

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comp(8390..8632)
DNA (243bp) protein (81aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12689_13
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

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8929..9525
DNA (597bp) protein (199aa)
Ser/Thr protein phosphatase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_42_22_curated
Ser/Thr protein phosphatase family protein id=5048113 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Metallophosphoesterase
rifcsplowo2_01_scaffold_12689_14
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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9553..10749
DNA (1197bp) protein (399aa)
Putative protease; K08303 putative protease [EC:3.4.-.-] Tax=CG_Ignavi_01
Peptidase U32 id=3880844 bin=GWF2_Melioribacter_38_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
peptidase U32
rifcsplowo2_01_scaffold_12689_15
unknown

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10917..11315
DNA (399bp) protein (133aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12689_16
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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11312..11902
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3B7E
Uncharacterized protein {ECO:0000313|EMBL:AFR07689.1}; TaxID=1205910 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA
hypothetical protein
rifcsplowo2_01_scaffold_12689_17
unknown

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comp(11852..12625)
DNA (774bp) protein (258aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12689_18

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comp(13006..14877)
DNA (1872bp) protein (624aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI000371EA94
Uncharacterized protein {ECO:0000313|EMBL:KKM42167.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Thrombospondin type 3 repeat protein (modular protein)
rifcsplowo2_01_scaffold_12689_19
unknown

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comp(15204..16154)
DNA (951bp) protein (317aa)
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein id=12557218 bin=CNBR_ACIDO species=Nocardia sp. BMG111209 genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rifcsplowo2_01_scaffold_12689_20
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

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comp(16239..17597)
DNA (1359bp) protein (453aa)
signal recognition particle Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_42_22_curated
Signal recognition particle 54 kDa protein id=5800735 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
SRP54-type protein, GTPase protein
rifcsplowo2_01_scaffold_12689_21
GWB1_OD1_43_7, Nomurabacteria, Parcubacteria, Bacteria

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comp(17665..18240)
DNA (576bp) protein (192aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT18865.1}; TaxID=1618747 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_43_7.;"
rifcsplowo2_01_scaffold_12689_22
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(18253..18768)
DNA (516bp) protein (172aa)
NYN domain protein n=1 Tax=Bacteriovorax sp. DB6_IX RepID=T0RLD9_9DELT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_42_22_curated
hypothetical protein
rifcsplowo2_01_scaffold_12689_23
AR9, Woesearchaeaota, DPANN, Archaea

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18999..19388
DNA (390bp) protein (130aa)
Tax=AR9
rifcsplowo2_01_scaffold_12689_24
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(19402..19938)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E6Q4_9BACT
Uncharacterized protein Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsplowo2_01_scaffold_12689_25
AR9, Woesearchaeaota, DPANN, Archaea

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comp(20223..21755)
DNA (1533bp) protein (511aa)
hypothetical protein; K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=AR9
Arginine--tRNA ligase id=5800697 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_12689_26

Not on your lists

21976..22941
DNA (966bp) protein (322aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55360.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
hypothetical protein id=129040 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
hypothetical protein
rifcsplowo2_01_scaffold_12689_27
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

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comp(22996..23685)
DNA (690bp) protein (230aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta id=2122795 bin=GWB2_Chloroflexi_54_36 species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_42_22_curated
rifcsplowo2_01_scaffold_12689_28
R_OD1_Wolfebacteria_45_10c, Wolfebacteria, Parcubacteria, Bacteria

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comp(23682..24053)
DNA (372bp) protein (124aa)
Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_45_10c_curated
rifcsplowo2_01_scaffold_12689_29
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

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24345..25172
DNA (828bp) protein (276aa)
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase (EC:1.8.4.11 1.8.4.12) Tax=RBG_16_Zixibacteria_40_9_curated
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase (EC:1.8.4.11 1.8.4.12)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L8S1_9BACT
rifcsplowo2_01_scaffold_12689_30
unknown

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comp(25185..25529)
DNA (345bp) protein (115aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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