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rifcsplowo2_01_scaffold_5060

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_5060_1
unknown

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97..354
DNA (258bp) protein (86aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_2
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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653..1189
DNA (537bp) protein (179aa)
Uncharacterized protein {ECO:0000313|EMBL:KGS08074.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" sourc
rifcsplowo2_01_scaffold_5060_3
unknown

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comp(1215..2489)
DNA (1275bp) protein (425aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_4
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

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comp(2534..3133)
DNA (600bp) protein (200aa)
Ser/Thr protein phosphatase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_42_22_curated
Ser/Thr protein phosphatase family protein id=5048113 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Metallophosphoesterase
rifcsplowo2_01_scaffold_5060_5
unknown

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3266..4033
DNA (768bp) protein (256aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_6
unknown

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4030..4512
DNA (483bp) protein (161aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(4792..5379)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003627A1D
translin, putative Tax=CG_Woesearch_02
haloacid dehalogenase
rifcsplowo2_01_scaffold_5060_8

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5715..5948
DNA (234bp) protein (78aa)
Sm ribonucleoprotein-like protein; K04796 small nuclear ribonucleoprotein id=5047450 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Small nuclear ribonucleoprotein {ECO:0000313|EMBL:KHO45268.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
Like-Sm ribonucleoprotein core
rifcsplowo2_01_scaffold_5060_9
unknown

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6011..6190
DNA (180bp) protein (60aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_10

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comp(6393..7115)
DNA (723bp) protein (241aa)
id=5047476 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO45294.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsplowo2_01_scaffold_5060_11
AR18, Woesearchaeaota, DPANN, Archaea

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comp(7525..9147)
DNA (1623bp) protein (541aa)
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6] id=5046890 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6] Tax=AR18
lysyl-tRNA synthetase
rifcsplowo2_01_scaffold_5060_12

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9242..10126
DNA (885bp) protein (295aa)
phosphoribosyl transferase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=5042287 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:KHO46785.1}; EC=2.7.6.1 {ECO:0000313|EMBL:KHO46785.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
rifcsplowo2_01_scaffold_5060_13
unknown

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comp(10138..10839)
DNA (702bp) protein (234aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_14
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(10911..11537)
DNA (627bp) protein (209aa)
Cob(I)alamin adenosyltransferase n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YB26_DICT6
Cob(I)yrinic acid a,c-diamide adenosyltransferase CobO Tax=S_Thermoanaerobacterales_50_218
cob(I)alamin adenosyltransferase
rifcsplowo2_01_scaffold_5060_15
R_OP3X_45_10, OP3X, Bacteria

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comp(11560..13635)
DNA (2076bp) protein (692aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_01_FULL_OP3X_45_10_curated
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] id=5802018 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
ribonucleoside-diphosphate reductase
rifcsplowo2_01_scaffold_5060_16
unknown

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comp(13788..13877)
DNA (90bp) protein (30aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(13900..18279)
DNA (4380bp) protein (1460aa)
nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_c
B12-dependent ribonucleoside diphosphate reductase id=4677112 bin=GWA2_OP3_52_12 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
B12-dependent ribonucleoside diphosphate reductase
rifcsplowo2_01_scaffold_5060_18
RBG_13_OD1_Falkowbacteria_36_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

18744..19265
DNA (522bp) protein (174aa)
hypothetical protein Tax=RBG_13_OD1_Falkowbacteria_36_9_curated
hypothetical protein id=5091473 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
rifcsplowo2_01_scaffold_5060_19
unknown

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19347..19838
DNA (492bp) protein (164aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_20
unknown

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19947..20303
DNA (357bp) protein (119aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_21

Not on your lists


20399..20671
DNA (273bp) protein (91aa)
Diphthamide synthase subunit DPH2 {ECO:0000313|EMBL:KHO55434.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
Diphthamide synthase, subunit DPH2 id=5799798 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
diphthamide synthase, subunit DPH2
rifcsplowo2_01_scaffold_5060_22

Not on your lists

20750..20923
DNA (174bp) protein (58aa)
hypothetical protein id=5048664 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45327.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_5060_23

Not on your lists

20930..21673
DNA (744bp) protein (248aa)
Diphthamide synthase subunit DPH2 {ECO:0000313|EMBL:KHO55433.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
Diphthamide biosynthesis enzyme Dph2 id=5799580 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_5060_24
unknown

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21670..22398
DNA (729bp) protein (243aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_25
CG_Woesearch_02, Woesearchaeota, Archaea

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22587..22910
DNA (324bp) protein (108aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5044933 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_5060_26
unknown

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23209..24177
DNA (969bp) protein (323aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_27
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

24349..25200
DNA (852bp) protein (284aa)
putative DNA methylase Tax=CG_Arma_02
DNA modification methylase-like protein id=1247695 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
rifcsplowo2_01_scaffold_5060_28
unknown

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25202..25789
DNA (588bp) protein (196aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5060_29
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

25839..26795
DNA (957bp) protein (319aa)
TIM-barrel protein, nifR3 family n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D3L8_9ARCH
NifR3 family TIM-barrel protein
NifR3 family TIM-barrel protein {ECO:0000313|EMBL:AJM93383.1}; TaxID=1582439 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus
rifcsplowo2_01_scaffold_5060_30
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

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comp(26774..27790)
DNA (1017bp) protein (339aa)
tRNA 2-selenouridine synthase; K06917 tRNA 2-selenouridine synthase [EC:2.9.1.-] Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
hypothetical protein n=1 Tax=Anaeromusa acidaminophila RepID=UPI000362940A
tRNA 2-selenouridine synthase
Displaying items 1-30 of 39 in total

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