ggKbase home page

rifcsplowo2_01_scaffold_12434

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_12434_1
unknown

Not on your lists

comp(445..951)
DNA (507bp) protein (169aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12434_2
unknown

Not on your lists

comp(1336..1794)
DNA (459bp) protein (153aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12434_3
Methanococcus aeolicus, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(1835..2830)
DNA (996bp) protein (332aa)
MscS Mechanosensitive ion channel n=1 Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=A6UU48_META3
MscS mechanosensitive ion channel
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABR56020.1}; TaxID=419665 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus a
rifcsplowo2_01_scaffold_12434_4
unknown

Not on your lists

2975..3637
DNA (663bp) protein (221aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12434_5
RHI_OD1_Uhrbacteria_60_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

3701..4603
DNA (903bp) protein (301aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-] Tax=RIFCSPHIGHO2_12_FULL_OD1_Uhrbacteria_60_25_curated
Thioredoxin-disulfide reductase (EC:1.8.1.9)
Alkyl hydroperoxide reductase subunit F id=4168192 bin=GWF2_OP3_43_52 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rifcsplowo2_01_scaffold_12434_6

Not on your lists

comp(4600..4932)
DNA (333bp) protein (111aa)
hypothetical protein id=5048668 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45331.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_12434_7

Not on your lists

4958..5149
DNA (192bp) protein (64aa)
hypothetical protein id=5048669 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45332.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_12434_8
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

5335..6090
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000380BDC3
hypothetical protein Tax=CG_Pacearch_02
putative Transcriptional regulator
rifcsplowo2_01_scaffold_12434_9
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

6127..6480
DNA (354bp) protein (118aa)
Tax=CG_Pacearch_02
rifcsplowo2_01_scaffold_12434_10
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

6495..6869
DNA (375bp) protein (125aa)
SnoaL-like polyketide cyclase n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z7T6_BELBD
SnoaL-like polyketide cyclase Tax=CG_Pacearch_02
SnoaL-like polyketide cyclase
rifcsplowo2_01_scaffold_12434_11
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

6939..7127
DNA (189bp) protein (63aa)
hypothetical protein id=5047333 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein Tax=AR18
small integral membrane protein
rifcsplowo2_01_scaffold_12434_12
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

7262..7618
DNA (357bp) protein (119aa)
Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsplowo2_01_scaffold_12434_13
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

Not on your lists

7644..7763
DNA (120bp) protein (40aa)
id=5047332 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=RBG_19FT_COMBO_Euryarchaeota_56_21_curated
rifcsplowo2_01_scaffold_12434_14
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

7765..7968
DNA (204bp) protein (68aa)
Putative uncharacterized protein id=5800337 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Putative uncharacterized protein Tax=AR15
hypothetical protein
rifcsplowo2_01_scaffold_12434_15
unknown

Not on your lists

comp(8024..8614)
DNA (591bp) protein (197aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12434_16
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

8741..9709
DNA (969bp) protein (323aa)
MarR family transcriptional regulator Tax=AR9
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
Transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein id=5241813 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_12434_17
Desulfurobacterium thermolithotrophum, Desulfurobacterium, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(9758..10411)
DNA (654bp) protein (218aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
Endonuclease III n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S2J2_DESTD
rifcsplowo2_01_scaffold_12434_18
unknown

Not on your lists

comp(10408..10542)
DNA (135bp) protein (45aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12434_19
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(10539..11174)
DNA (636bp) protein (212aa)
N-glycosylase/DNA lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
N-glycosylase/DNA lyase (EC:4.2.99.18 3.2.2.-)
Probable N-glycosylase/DNA lyase id=5800247 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_12434_20
unknown

Not on your lists

comp(11208..12161)
DNA (954bp) protein (318aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12434_21
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12186..12887)
DNA (702bp) protein (234aa)
hypothetical protein Tax=AR9
Uncharacterized protein id=5799956 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_12434_22
GWB1_OD1_36_5, Parcubacteria, Bacteria

Not on your lists

comp(12884..13180)
DNA (297bp) protein (99aa)
Lycopene cyclase {ECO:0000313|EMBL:KKQ08198.1}; TaxID=1618862 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_36_5.;"
transmembrane_regions 68..90 id=85012 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Lycopene cyclase
rifcsplowo2_01_scaffold_12434_23
Pyrococcus horikoshii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

13293..17543
DNA (4251bp) protein (1417aa)
1352aa long hypothetical ATP-dependent helicase LHR n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O58837_PYRHO
ATP-dependent helicase LHR
1352aa long hypothetical ATP-dependent helicase LHR {ECO:0000313|EMBL:BAA30209.1}; TaxID=70601 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyro
rifcsplowo2_01_scaffold_12434_24
unknown

Not on your lists

17568..17672
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 24 items

View Taxonomy