ggKbase home page

rifcsplowo2_01_scaffold_2876

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_2876_1
unknown

Not on your lists

3..116
DNA (114bp) protein (38aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_2
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

696..806
DNA (111bp) protein (37aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RBG_13_RIF_OD1_08_37_53_curated
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=2 Tax=Dictyoglomus RepID=SYC_DICT6 id=5103307 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_01_scaffold_2876_3
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

763..2124
DNA (1362bp) protein (454aa)
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=CG_Woesearch_02
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] id=5048461 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
rifcsplowo2_01_scaffold_2876_4
unknown

Not on your lists

comp(2129..2782)
DNA (654bp) protein (218aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_5

Not on your lists


comp(2848..5244)
DNA (2397bp) protein (799aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5048462 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02005}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02005};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02005}; TaxID=1579365 species="Archaea.;" source=
Valine-tRNA ligase
rifcsplowo2_01_scaffold_2876_6
unknown

Not on your lists

5297..5473
DNA (177bp) protein (59aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_7
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

5491..6348
DNA (858bp) protein (286aa)
PREDICTED: dentin sialophosphoprotein n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15B90
hypothetical protein Tax=CG_Woesearch_03
hypothetical protein
rifcsplowo2_01_scaffold_2876_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(6363..7577)
DNA (1215bp) protein (405aa)
replication factor C large subunit; K04800 replication factor C large subunit Tax=CG_Woesearch_02
replication factor C large subunit; K04800 replication factor C large subunit id=5048465 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
replication factor C large subunit
rifcsplowo2_01_scaffold_2876_9
RIFOXYB2_FULL_WOR_2_38_16_curated, WOR-2, Bacteria

Not on your lists

7688..9130
DNA (1443bp) protein (481aa)
Transporter id=3623456 bin=GWF2_OP3_38_59 species=Moorea producens genus=Moorea taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
sodium- and chloride-dependent transporter; K03308 neurotransmitter:Na+ symporter, NSS family Tax=RIFOXYB2_FULL_WOR_2_38_16_curated
sodium- and chloride-dependent transporter
rifcsplowo2_01_scaffold_2876_10
RBG_16_OP11_39_9b_curated, Microgenomates, Bacteria

Not on your lists

9167..10087
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FGL1_9EURY
hypothetical protein; K09799 hypothetical protein Tax=RBG_16_OP11_39_9b_curated
hypothetical protein
rifcsplowo2_01_scaffold_2876_11

Not on your lists


10231..11739
DNA (1509bp) protein (503aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase {ECO:0000313|EMBL:KHO52157.1}; Flags: Fragment;; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Glycyl-tRNA synthetase id=5799897 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_2876_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

11936..12262
DNA (327bp) protein (109aa)
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein id=5094111 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
rifcsplowo2_01_scaffold_2876_13
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12271..12765)
DNA (495bp) protein (165aa)
DnaJ-like molecular chaperone n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WP2_METBU
heat shock protein DnaJ-like protein Tax=AR9
heat shock protein DnaJ-like protein
rifcsplowo2_01_scaffold_2876_14

Not on your lists

comp(12827..13051)
DNA (225bp) protein (75aa)
Marine sediment metagenome DNA, contig: S12H4_L05252 {ECO:0000313|EMBL:GAI85299.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Cold shock DNA binding domain protein id=5799625 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
cold shock DNA binding domain-containing protein
rifcsplowo2_01_scaffold_2876_15
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

13356..13820
DNA (465bp) protein (155aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9W5_METEZ
methionine-S-sulfoxide reductase Tax=RBG_13_RIF03_48_7_curated
rifcsplowo2_01_scaffold_2876_16
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

14018..16576
DNA (2559bp) protein (853aa)
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] id=5040699 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase Tax=AR11
rifcsplowo2_01_scaffold_2876_17

Not on your lists

16726..17337
DNA (612bp) protein (204aa)
ATP:corrinoid adenosyltransferase, cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:KHO50752.1}; EC=2.5.1.17 {ECO:0000313|EMBL:KHO50752.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase n=2 Tax=Pyrococcus furiosus RepID=I6V0T9_9EURY
rifcsplowo2_01_scaffold_2876_18
unknown

Not on your lists

comp(17334..17663)
DNA (330bp) protein (110aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(17647..17925)
DNA (279bp) protein (93aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] Tax=RBG_16_Archaea_50_20_curated
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
hypothetical protein n=1 Tax=Geitlerinema sp. PCC 7105 RepID=UPI0003619595
rifcsplowo2_01_scaffold_2876_20
unknown

Not on your lists

18028..18159
DNA (132bp) protein (44aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_21
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

18164..20002
DNA (1839bp) protein (613aa)
nrdA; ribonucleoside-diphosphate reductase alpha chain (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase alpha chain {ECO:0000313|EMBL:BAI80638.1}; EC=1.17.4.1 {ECO:0000313|EMBL:BAI80638.1};; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferrib
Ribonucleoside-diphosphate reductase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PDG5_DEFDS
rifcsplowo2_01_scaffold_2876_22
RLO_OD1_60_15, Parcubacteria, Bacteria

Not on your lists

20004..20519
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037FBBE4
N-acetyltransferase GCN5 Tax=RIFCSPLOWO2_12_FULL_OD1_60_15_curated
N-acetyltransferase GCN5
rifcsplowo2_01_scaffold_2876_23
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

20571..21170
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003816AF2
hypothetical protein
hypothetical protein Tax=CG_Woesearch_01
rifcsplowo2_01_scaffold_2876_24
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

21167..21427
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003707988
hypothetical protein Tax=CG_Woesearch_01
hypothetical protein
rifcsplowo2_01_scaffold_2876_25

Not on your lists

21438..21992
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51130.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein id=1745640 bin=GWE2_Clostridiales_32_10 species=Candidatus Micrarchaeum acidiphilum genus=Candidatus Micrarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
YdeN-like protein
rifcsplowo2_01_scaffold_2876_26
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

22036..23205
DNA (1170bp) protein (390aa)
Major facilitator superfamily MFS_1 n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KP11_ARCVS
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEA46319.1}; Flags: Precursor;; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" so
rifcsplowo2_01_scaffold_2876_27
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

23207..23707
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI000378B6FD
hypothetical protein Tax=AR11
membrane protein
rifcsplowo2_01_scaffold_2876_28

Not on your lists

23862..24194
DNA (333bp) protein (111aa)
hypothetical protein
Uncharacterised protein family UPF0175 id=5241736 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60727.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsplowo2_01_scaffold_2876_29
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

24360..24806
DNA (447bp) protein (149aa)
thiol-specific antioxidant protein id=18248451 bin=AR5_curated_draft species=Leptospirillum sp. Group II '5-way CG' genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
thiol-specific antioxidant protein Tax=AR5
alkyl hydroperoxide reductase
rifcsplowo2_01_scaffold_2876_30
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

24816..25295
DNA (480bp) protein (160aa)
Bacterioferritin {ECO:0000313|EMBL:KKU99853.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
Bacterioferritin id=1250209 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
bacterioferritin
Displaying items 1-30 of 96 in total

View Taxonomy