ggKbase home page

rifcsplowo2_01_scaffold_540

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_540_1
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(1..546)
DNA (546bp) protein (182aa)
Radical SAM domain protein id=3475377 bin=GWA2_OP3_52_12 species=unknown genus=Pyrobaculum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Radical SAM domain protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Methyltransferase type 11
rifcsplowo2_01_scaffold_540_2
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(582..1799)
DNA (1218bp) protein (406aa)
Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIC2_9ACTO
helix-turn-helix domain-containing protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEP70562.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC
rifcsplowo2_01_scaffold_540_3
RBG_13_RIF_OD1_07_38_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(1869..2639)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AAA076-D02 RepID=UPI000364DAAA
nucleotidyl transferase Tax=RBG_13_RIF_OD1_07_38_11_curated
sugar nucleotidyltransferase-like protein
rifcsplowo2_01_scaffold_540_4
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2636..3934)
DNA (1299bp) protein (433aa)
Phosphoenolpyruvate phosphomutase n=4 Tax=Pelosinus fermentans RepID=I8SLN6_9FIRM
Phosphoenolpyruvate phosphomutase {ECO:0000313|EMBL:KGM92767.1}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str.
phosphoenolpyruvate phosphomutase
rifcsplowo2_01_scaffold_540_5
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(3991..4692)
DNA (702bp) protein (234aa)
nucleotidyl transferase Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
Glucose-1-phosphate cytidylyltransferase id=3475387 bin=GWA2_OP3_52_12 species=Pseudomonas sp. HPB0071 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
rifcsplowo2_01_scaffold_540_6
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(4689..5486)
DNA (798bp) protein (266aa)
phosphonate ABC transporter permease; K02042 phosphonate transport system permease protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
Phosphonate ABC transporter, inner membrane subunit id=3475385 bin=GWA2_OP3_52_12 species=Pseudomonas putida genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
phosphonate ABC transporter permease
rifcsplowo2_01_scaffold_540_7
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(5488..6261)
DNA (774bp) protein (258aa)
phnC; phosphonate ABC transporter, ATP-binding protein (EC:3.6.3.28) Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
methionine ABC transporter ATP-binding protein n=1 Tax=Paenibacillus polymyxa RepID=UPI0003760CDC
phosphonate ABC transporter ATP-binding protein
rifcsplowo2_01_scaffold_540_8
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(6277..7200)
DNA (924bp) protein (308aa)
phosphonate ABC transporter substrate-binding protein; K02044 phosphonate transport system substrate-binding protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
Phosphonate ABC transporter substrate-binding protein id=3475381 bin=GWA2_OP3_52_12 species=Paenibacillus sp. Aloe-11 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
phosphonate ABC transporter substrate-binding protein
rifcsplowo2_01_scaffold_540_9

Not on your lists

comp(7201..7764)
DNA (564bp) protein (188aa)
Marine sediment metagenome DNA, contig: S12H4_S14932 {ECO:0000313|EMBL:GAJ08202.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Putative uncharacterized protein id=3633783 bin=GWF2_Bacteroidetes_29_10 species=Fusobacterium varium genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
putative glycerol-3-phosphate cytidylyltransferase
rifcsplowo2_01_scaffold_540_10
R_OP11_Levybacteria_36_8b, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(7863..8477)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U7S6_9CHLR
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_OP11_Levybacteria_36_8b_curated
hypothetical protein
rifcsplowo2_01_scaffold_540_11

Not on your lists

comp(8572..9753)
DNA (1182bp) protein (394aa)
Putative uncharacterized protein id=3475354 bin=GWA2_OP3_52_12 species=Roseburia inulinivorans genus=Roseburia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors rbh
Marine sediment metagenome DNA, contig: S01H4_C01008 {ECO:0000313|EMBL:GAG60388.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
rifcsplowo2_01_scaffold_540_12
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

9835..11112
DNA (1278bp) protein (426aa)
UDP-glucose 6-dehydrogenase id=5800129 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
UDP-glucose 6-dehydrogenase Tax=AR15
nucleotide sugar dehydrogenase
rifcsplowo2_01_scaffold_540_13
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

11306..11944
DNA (639bp) protein (213aa)
hypothetical protein Tax=AR11
rifcsplowo2_01_scaffold_540_14
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

11941..13440
DNA (1500bp) protein (500aa)
hypothetical protein Tax=AR11
id=5047410 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_540_15
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

13470..17807
DNA (4338bp) protein (1446aa)
Subtilisin-like serine protease Tax=GWA2_OD1_31_28_partial
peptidase S8/S53 subtilisin kexin sedolisin id=5044239 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
peptidase S8/S53 subtilisin kexin sedolisin
rifcsplowo2_01_scaffold_540_16
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

18116..19162
DNA (1047bp) protein (349aa)
Subtilisin-like serine protease Tax=GWA2_OD1_31_28_partial
peptidase S8/S53 subtilisin kexin sedolisin id=5044239 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_540_17

Not on your lists

19152..21467
DNA (2316bp) protein (772aa)
Metallophosphoesterase id=5044242 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Metallophosphoesterase {ECO:0000313|EMBL:KHO46523.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsplowo2_01_scaffold_540_18
R_RIF_OD1_06_43_17b, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(21497..22429)
DNA (933bp) protein (311aa)
putative uDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_43_17b_curated
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6U1F6_9EURY
galE-1; UDP-glucose 4-epimerase
rifcsplowo2_01_scaffold_540_19

Not on your lists

22582..23775
DNA (1194bp) protein (398aa)
glycosyltransferase id=5045911 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Glycosyltransferase {ECO:0000313|EMBL:KHO46256.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
glycosyltransferase
rifcsplowo2_01_scaffold_540_20
Thermococcus paralvinellae, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(23765..24835)
DNA (1071bp) protein (357aa)
UDP-n-acetylglucosamine 2-epimerase n=2 Tax=Pyrococcus furiosus RepID=I6UP71_9EURY
UDP-N-acetylglucosamine 2-epimerase
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:AHF81262.1}; TaxID=582419 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus para
rifcsplowo2_01_scaffold_540_21

Not on your lists

comp(24832..25581)
DNA (750bp) protein (250aa)
UDP-glucose/GDP-mannose dehydrogenase
UDP-glucose/GDP-mannose dehydrogenase id=5241154 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:AJF60145.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsplowo2_01_scaffold_540_22

Not on your lists

comp(25578..26570)
DNA (993bp) protein (331aa)
oxidoreductase domain-containing protein id=5045908 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Oxidoreductase protein {ECO:0000313|EMBL:KHO46253.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
oxidoreductase protein
rifcsplowo2_01_scaffold_540_23
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(26897..29809)
DNA (2913bp) protein (971aa)
Putative uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
hypothetical protein
hypothetical protein id=5094891 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
rifcsplowo2_01_scaffold_540_24
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(29890..30393)
DNA (504bp) protein (168aa)
hypothetical protein Tax=AR11
rifcsplowo2_01_scaffold_540_25
RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(30486..31139)
DNA (654bp) protein (218aa)
Methyltransferase type 12 n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QTW3_CHLT3
type 12 methyltransferase Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated
Methyltransferase
rifcsplowo2_01_scaffold_540_26
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(31114..32160)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PV62_METMA
Uncharacterized protein {ECO:0000313|EMBL:AKB69085.1}; TaxID=1434114 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina m
hypothetical protein
rifcsplowo2_01_scaffold_540_27
RHI_OP11_Daviesbacteria_43_11, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(32253..33773)
DNA (1521bp) protein (507aa)
radical SAM family Fe-S protein (EC:1.14.13.81); K04035 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81] Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_43_11_curated
Radical SAM protein with Cobalamin (Vitamin B12)-binding domain id=2881692 bin=GWF2_OP3_43_52 species=Methanococcoides burtonii genus=Methanococcoides taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
radical SAM domain-containing protein
rifcsplowo2_01_scaffold_540_28

Not on your lists

33924..34061
DNA (138bp) protein (46aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon W4-93a RepID=H9BWW7_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AFD03289.1}; TaxID=1131007 species="Archaea; environmental samples.;" source="uncultured archaeon W4-93a.;"
rifcsplowo2_01_scaffold_540_29
unknown

Not on your lists

34095..34229
DNA (135bp) protein (45aa)

This feature has no annotations

rifcsplowo2_01_scaffold_540_30
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34242..35792
DNA (1551bp) protein (517aa)
Uncharacterized protein n=3 Tax=Clostridium botulinum RepID=A5I5E2_CLOBH
Uncharacterized protein {ECO:0000313|EMBL:KEZ88751.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
Displaying items 1-30 of 76 in total

View Taxonomy