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rifcsphigho2_02_scaffold_5130

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5130_1
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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103..543
-----------------
DNA (441bp)
protein (147aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W214_UNCMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ37579.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae
rifcsphigho2_02_scaffold_5130_2
unknown

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comp(584..1612)
-----------------
DNA (1029bp)
protein (343aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_3
unknown

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comp(1643..1801)
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_4
AR5, Aenigmarchaeota, DPANN, Archaea

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2299..3558
-----------------
DNA (1260bp)
protein (420aa)
transmembrane_regions Tax=AR5
transmembrane_regions id=18248805 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsphigho2_02_scaffold_5130_5

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4000..4428
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG13734.1}; TaxID=717931 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
hypothetical protein id=5045321 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_5130_6
unknown

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4425..7244
-----------------
DNA (2820bp)
protein (940aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_7
AR5, Aenigmarchaeota, DPANN, Archaea

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7287..8789
-----------------
DNA (1503bp)
protein (501aa)
seg id=18248807 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
seg Tax=AR5
rifcsphigho2_02_scaffold_5130_8
unknown

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8892..9770
-----------------
DNA (879bp)
protein (293aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_9
R_OP11_Daviesbacteria_39_12, Daviesbacteria, Microgenomates, Bacteria

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comp(10123..10785)
-----------------
DNA (663bp)
protein (221aa)
Putative uncharacterized protein n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MF56_9BACT id=23745 bin=ACD22 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD22 organism_group=WWE3 organism_desc=WWE3
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Daviesbacteria_39_12_curated
rifcsphigho2_02_scaffold_5130_10
GWF2_OD1_35_39, Moranbacteria, Parcubacteria, Bacteria

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comp(10785..10997)
-----------------
DNA (213bp)
protein (71aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP78438.1}; TaxID=1618721 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWF2_35_39.;"
rifcsphigho2_02_scaffold_5130_11
unknown

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comp(10994..11173)
-----------------
DNA (180bp)
protein (60aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJB6_9ZZZZ id=5103356 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJB6_9ZZZZ Tax=AR20
hypothetical protein
rifcsphigho2_02_scaffold_5130_12
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

11242..13050
-----------------
DNA (1809bp)
protein (603aa)
seg id=18248807 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
seg Tax=AR5
rifcsphigho2_02_scaffold_5130_13
unknown

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comp(13113..13424)
-----------------
DNA (312bp)
protein (104aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_14
unknown

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13888..15552
-----------------
DNA (1665bp)
protein (555aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_15
AR5, Aenigmarchaeota, DPANN, Archaea

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15569..16732
-----------------
DNA (1164bp)
protein (388aa)
seg id=18248807 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
seg Tax=AR5
rifcsphigho2_02_scaffold_5130_16

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comp(16815..18053)
-----------------
DNA (1239bp)
protein (413aa)
Predicted peptidase n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NFA0_METST rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN27169.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase
rifcsphigho2_02_scaffold_5130_17
RIFOXYB2_FULL_Gammaproteobacteria_38_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18314..20791)
-----------------
DNA (2478bp)
protein (826aa)
adenine-specific DNA methylase Tax=RIFOXYB2_FULL_Gammaproteobacteria_38_6_curated
Adenine-specific DNA methylase id=1798140 bin=GWB2_Ignavibacteria_35_12 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good rbh
adenine-specific DNA methylase
rifcsphigho2_02_scaffold_5130_18

Not on your lists

20893..22410
-----------------
DNA (1518bp)
protein (506aa)
polysaccharide biosynthesis protein id=5043091 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KHO47450.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
polysaccharide biosynthesis protein
rifcsphigho2_02_scaffold_5130_19
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

22451..23074
-----------------
DNA (624bp)
protein (208aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_02_scaffold_5130_20
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

23067..23780
-----------------
DNA (714bp)
protein (238aa)
hypothetical protein id=5048336 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_02_scaffold_5130_21
RBG_16_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

23994..24215
-----------------
DNA (222bp)
protein (74aa)
AbrB family transcriptional regulator Tax=RBG_16_RIF03_38_11_curated
AbrB family transcriptional regulator id=3123519 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Alishewanella agri genus=Alishewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
AbrB; regulators of stationary/sporulation gene expression
rifcsphigho2_02_scaffold_5130_22
RBG_16_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

24199..24579
-----------------
DNA (381bp)
protein (127aa)
Ribonuclease VapC n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D502_PELTS
twitching motility protein PilT Tax=RBG_16_RIF03_38_11_curated
nucleic acid-binding protein
rifcsphigho2_02_scaffold_5130_23
unknown

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comp(24650..25228)
-----------------
DNA (579bp)
protein (193aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_24
unknown

Not on your lists

comp(25225..26268)
-----------------
DNA (1044bp)
protein (348aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_25
unknown

Not on your lists

comp(26271..27452)
-----------------
DNA (1182bp)
protein (394aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5130_26
unknown

Not on your lists

comp(27507..28244)
-----------------
DNA (738bp)
protein (246aa)

This feature has no annotations

Displaying 26 items

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