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rifcsphigho2_02_scaffold_5359

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5359_1
unknown

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comp(307..819)
-----------------
DNA (513bp)
protein (171aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5359_2
unknown

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comp(855..962)
-----------------
DNA (108bp)
protein (36aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5359_3
CG_CPR01_01, CG_CPR01, Bacteria

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1056..3041
-----------------
DNA (1986bp)
protein (662aa)
pyrophosphate-energized proton pump (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=CG_CPR01_01
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] id=5042338 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
rifcsphigho2_02_scaffold_5359_4
unknown

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comp(3096..3590)
-----------------
DNA (495bp)
protein (165aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5359_5
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3716..4933
-----------------
DNA (1218bp)
protein (406aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1262801 species="Bacteria;
pgk; phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase n=1 Tax=Orenia marismortui RepID=UPI00035F69C2
rifcsphigho2_02_scaffold_5359_6
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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5051..5629
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI00036A7FBA
rubrerythrin Tax=RBG_13_Bathyarchaeota_52_12_curated
rubrerythrin
rifcsphigho2_02_scaffold_5359_7
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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comp(5657..6910)
-----------------
DNA (1254bp)
protein (418aa)
Uncharacterized protein Tax=GWA2_WOR_2_47_8_curated
Uncharacterized protein id=5045830 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_5359_8

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7397..8683
-----------------
DNA (1287bp)
protein (429aa)
elongation factor 1-alpha (EC:2.7.7.4); K03231 elongation factor 1-alpha id=5043694 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118};
Elongation factor 1-alpha
rifcsphigho2_02_scaffold_5359_9

Not on your lists


8743..9051
-----------------
DNA (309bp)
protein (103aa)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S10 id=5800771 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps10p; 30S ribosomal protein S10P
rifcsphigho2_02_scaffold_5359_10
unknown

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9102..9575
-----------------
DNA (474bp)
protein (158aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5359_11
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9905..11554)
-----------------
DNA (1650bp)
protein (550aa)
L-threonine synthase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4M8H7_9EURY
L-threonine synthase
L-threonine synthase {ECO:0000313|EMBL:AFV22545.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrop
rifcsphigho2_02_scaffold_5359_12
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

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comp(11650..12804)
-----------------
DNA (1155bp)
protein (385aa)
cystathionine gamma-lyase (EC:4.4.1.1); K01760 cystathionine beta-lyase [EC:4.4.1.8] Tax=RBG_13_Chloroflexi_54_8_curated
cystathionine gamma-lyase (EC:4.4.1.1)
hypothetical protein n=1 Tax=Fangia hongkongensis RepID=UPI000370A783
rifcsphigho2_02_scaffold_5359_13
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(12910..13440)
-----------------
DNA (531bp)
protein (177aa)
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=GWF2_Bacteroidetes_35_48_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B6R3_9DELT
rifcsphigho2_02_scaffold_5359_14
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(13601..14869)
-----------------
DNA (1269bp)
protein (423aa)
putative glycosyltransferase (EC:2.4.-.-)
Putative glycosyltransferase {ECO:0000313|EMBL:BAJ62207.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAJ62207.1};; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaer
Putative glycosyltransferase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZ64_ANATU
rifcsphigho2_02_scaffold_5359_15
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

15072..16172
-----------------
DNA (1101bp)
protein (367aa)
translation initiation factor, aIF-2BI family (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
translation initiation factor, aIF-2BI family (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase id=2090435 bin=GWD2_RBX1-related_39_127 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17 rbh
rifcsphigho2_02_scaffold_5359_16
unknown

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16153..16614
-----------------
DNA (462bp)
protein (154aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5359_17
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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16607..17158
-----------------
DNA (552bp)
protein (184aa)
Nitroreductase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E886_METEZ
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ADI73428.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium evestigat
rifcsphigho2_02_scaffold_5359_18
R_Nitrospirae_40_19, Nitrospirae, Bacteria

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17218..17952
-----------------
DNA (735bp)
protein (245aa)
DhnA-type fructose-1,6-bisphosphate aldolase (EC:4.2.1.-); K08321 putative autoinducer-2 (AI-2) aldolase [EC:4.1.2.-] Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
DhnA-type fructose-1,6-bisphosphate aldolase (EC:4.2.1.-)
Fructose-bisphosphate aldolase id=1873959 bin=GWB2_Nitrospirae_rel_47_37 species=Thermoplasmatales archaeon SCGC AB-539-N05 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Displaying 18 items

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