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rifcsphigho2_02_scaffold_3177

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_3177_1
unknown

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308..706
DNA (399bp) protein (133aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3177_2

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comp(962..1486)
DNA (525bp) protein (175aa)
Marine sediment metagenome DNA, contig: S01H1_S21807 {ECO:0000313|EMBL:GAG16603.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Helix-turn-helix, type 11 id=5043991 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_3177_3

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comp(1605..2300)
DNA (696bp) protein (232aa)
hypothetical protein id=5045855 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46468.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_3177_4
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2455..3618)
DNA (1164bp) protein (388aa)
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 Tax=AR11
Peptide chain release factor subunit 1 id=5800374 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
peptide chain release factor subunit 1
rifcsphigho2_02_scaffold_3177_5
unknown

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3912..4448
DNA (537bp) protein (179aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3177_6
unknown

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comp(4494..5816)
DNA (1323bp) protein (441aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3177_7
CG_Micra_02, Micraarchaeota, Archaea

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5939..6589
DNA (651bp) protein (217aa)
conserved archaeal protein, aspartokinase domain protein Tax=CG_Micra_02
UPI000038E2D0 related cluster id=5800598 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_3177_8
R_OD1_Falkowbacteria_39_8, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6623..8038)
DNA (1416bp) protein (472aa)
MTAP; methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RIFCSPHIGHO2_01_FULL_OD1_Falkowbacteria_39_8_curated
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Ictalurus punctatus RepID=E3TFK1_ICTPU
5'-deoxy-5'-methylthioadenosine phosphorylase
rifcsphigho2_02_scaffold_3177_9
Halobacteriovorax marinus, Halobacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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8622..9353
DNA (732bp) protein (244aa)
Putative phosphoribosyltransferase n=1 Tax=Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) RepID=E1X5Q1_BACMS
hpt; putative phosphoribosyltransferase
Putative phosphoribosyltransferase {ECO:0000313|EMBL:CBW25618.1}; TaxID=862908 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Halobacteriovoraceae; Halobacteriovorax.;" sou
rifcsphigho2_02_scaffold_3177_10
AR11, Woesearchaeaota, DPANN, Archaea

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9694..10746
DNA (1053bp) protein (351aa)
Chromosome partitioning protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJK3_9BACT
Chromosome partitioning protein Tax=AR11
cobyrinic acid ac-diamide synthase
rifcsphigho2_02_scaffold_3177_11
GWB1_OP11_38_5_partial, Woesebacteria, Microgenomates, Bacteria

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11044..11910
DNA (867bp) protein (289aa)
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium sp. CAG:533 RepID=R6AMS7_9CLOT
Putative ribosomal RNA small subunit methyltransferase A {ECO:0000313|EMBL:KKQ74175.1}; TaxID=1618569 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_
ribosomal RNA small subunit methyltransferase A
rifcsphigho2_02_scaffold_3177_12
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(11972..13009)
DNA (1038bp) protein (346aa)
hypothetical protein; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=CG_Woesearch_03
Methionine synthase II (Cobalamin-independent) n=1 Tax=uncultured Planctomycetales bacterium HF0770_03I01 RepID=E7C6G6_9BACT
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
rifcsphigho2_02_scaffold_3177_13
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(13009..13743)
DNA (735bp) protein (245aa)
Tax=CG_Woesearch_03
rifcsphigho2_02_scaffold_3177_14
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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13926..15014
DNA (1089bp) protein (363aa)
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KKU99850.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
Transcriptional regulator
Transcriptional regulator id=5240686 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_3177_15

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comp(15052..15360)
DNA (309bp) protein (103aa)
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 id=5043693 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rps10p; 30S ribosomal protein S10P
rifcsphigho2_02_scaffold_3177_16

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comp(15517..16800)
DNA (1284bp) protein (428aa)
translation elongation factor 1a (ef-1a/ef-tu) (EC:2.7.7.4); K03231 elongation factor 1-alpha id=5043959 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118};
Elongation factor 1-alpha
rifcsphigho2_02_scaffold_3177_17
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

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comp(16982..18760)
DNA (1779bp) protein (593aa)
Multi-sensor hybrid histidine kinase id=2990035 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
multi-sensor hybrid histidine kinase Tax=GWC2_Nitrospirae_42_7_curated
signal transduction histidine kinase, nitrogen specific, NtrB
rifcsphigho2_02_scaffold_3177_18

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comp(19052..21226)
DNA (2175bp) protein (725aa)
Elongation factor 2 {ECO:0000256|SAAS:SAAS00088569}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Elongation factor 2 id=5800773 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Elongation factor 2
rifcsphigho2_02_scaffold_3177_19
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(21550..22029)
DNA (480bp) protein (160aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside-diphosphate kinase id=5800774 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Nucleoside-diphosphate kinase Tax=AR15
rifcsphigho2_02_scaffold_3177_20

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comp(22153..22359)
DNA (207bp) protein (69aa)
50S ribosomal protein L24; K02896 large subunit ribosomal protein L24e id=5045789 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L24e {ECO:0000313|EMBL:KHO46402.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
large subunit ribosomal protein L24e
rifcsphigho2_02_scaffold_3177_21
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(22470..22778)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003790FD9
rps28e; 30S ribosomal protein S28e; K02979 small subunit ribosomal protein S28e Tax=RBG_13_Woesearchaeota_36_6_curated
30S ribosomal protein S28e
rifcsphigho2_02_scaffold_3177_22
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(22798..23130)
DNA (333bp) protein (111aa)
rpl7ae; 50S ribosomal protein L7; K02936 large subunit ribosomal protein L7Ae Tax=CG_Woesearch_02
50S ribosomal protein L7Ae id=5800777 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L7Ae
rifcsphigho2_02_scaffold_3177_23
unknown

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comp(23591..23695)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 23 items

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