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rifcsphigho2_02_scaffold_7663

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_7663_1
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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224..1273
DNA (1050bp) protein (350aa)
NMD3 family protein; K07562 nonsense-mediated mRNA decay protein 3 Tax=RBG_13_Woesearchaeota_36_6_curated
Predicted nonsense mediated mRNA decay protein id=5800424 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_7663_2
Thermoplasmatales archaeon SCGC AB-540-F20, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(1274..2326)
DNA (1053bp) protein (351aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1242866 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7T7N5_9EURY
rifcsphigho2_02_scaffold_7663_3

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comp(2462..3709)
DNA (1248bp) protein (416aa)
hypothetical protein; K09150 hypothetical protein id=5043729 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47045.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsphigho2_02_scaffold_7663_4
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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3847..4869
DNA (1023bp) protein (341aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] Tax=CG_Deferri_01
Proline dehydrogenase n=1 Tax=Anoxybacillus flavithermus TNO-09.006 RepID=M5JAM9_9BACI
proline dehydrogenase
rifcsphigho2_02_scaffold_7663_5
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4941..6077
DNA (1137bp) protein (379aa)
ribD; riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V4J1_CLOBA
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769, ECO:0000313|EMBL:CEP39456.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
rifcsphigho2_02_scaffold_7663_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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6149..7300
DNA (1152bp) protein (384aa)
Protoporphyrinogen oxidase n=1 Tax=uncultured bacterium RepID=K2APW8_9BACT rbh
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
protoporphyrinogen oxidase
rifcsphigho2_02_scaffold_7663_7
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

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comp(7368..8807)
DNA (1440bp) protein (480aa)
biotin and thiamin synthesis associated; K03150 thiamine biosynthesis ThiH Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
Strongly similair to thiamine biosynthesis enzyme ThiH id=3597623 bin=GWF2_OP3_43_52 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
biotin and thiamin synthesis associated protein
rifcsphigho2_02_scaffold_7663_8
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9070..10377)
DNA (1308bp) protein (436aa)
radical SAM protein; K01012 biotin synthetase [EC:2.8.1.6] Tax=RBG_16_Gammaproteobacteria_37_9_curated
Similar to biotin synthase id=2165181 bin=GWE2_Gammaproteobacteria_42_36 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWE2_Gammaproteobacteria_42_36 organism_group=Gammaproteobacteria organism_desc=Small but looks good
Radical SAM domain-containing protein
rifcsphigho2_02_scaffold_7663_9
R_OP11_Roizmanbacteria_37_12, Roizmannbacteria, Microgenomates, Bacteria

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comp(10771..11031)
DNA (261bp) protein (87aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_37_12_curated
rifcsphigho2_02_scaffold_7663_10
AR15, Woesearchaeaota, DPANN, Archaea

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11176..11601
DNA (426bp) protein (142aa)
hypothetical protein
id=5799548 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR15
rifcsphigho2_02_scaffold_7663_11

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comp(12064..12396)
DNA (333bp) protein (111aa)
Ribonuclease P protein component 4 {ECO:0000256|HAMAP-Rule:MF_00757}; Short=RNase P component 4 {ECO:0000256|HAMAP-Rule:MF_00757};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00757};; Rpp21 {ECO:0000256|H
Ribonuclease P protein component 4 id=5799801 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RNAse P, Rpr2/Rpp21 subunit
rifcsphigho2_02_scaffold_7663_12
unknown

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comp(12414..12545)
DNA (132bp) protein (44aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7663_13
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12542..12922)
DNA (381bp) protein (127aa)
ATP-dependent DNA helicase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8Q0D9_METMA
Uncharacterized protein {ECO:0000313|EMBL:AKB27758.1}; TaxID=1434120 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
ATP-dependent DNA helicase
rifcsphigho2_02_scaffold_7663_14
R_OP11_43_14, Microgenomates, Bacteria

Not on your lists

comp(13016..13648)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A3L7_9BACT
hypothetical protein
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OP11_43_14_curated
rifcsphigho2_02_scaffold_7663_15
GWA2_OP11_37_6_partial, Microgenomates, Bacteria

Not on your lists

comp(13645..13863)
DNA (219bp) protein (73aa)
hypothetical protein Tax=GWA2_OP11_37_6_partial
rifcsphigho2_02_scaffold_7663_16
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(13883..14083)
DNA (201bp) protein (67aa)
Putative uncharacterized protein Tax=CG_Aenigma_01
rifcsphigho2_02_scaffold_7663_trna_1
unknown

Not on your lists

comp(14223..14329)
DNA (107bp)
transferRNA
Displaying 17 items

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