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rifcsphigho2_02_scaffold_6910

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_6910_1
CG_Omnitr_01, Omnitrophica, Bacteria

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1..603
DNA (603bp) protein (201aa)
triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=CG_Omnitr_01
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DA26_9BACL
rifcsphigho2_02_scaffold_6910_2
AR11, Woesearchaeaota, DPANN, Archaea

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comp(600..1184)
DNA (585bp) protein (195aa)
hypothetical protein Tax=AR11
id=5046578 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_6910_3
AR11, Woesearchaeaota, DPANN, Archaea

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comp(1177..2001)
DNA (825bp) protein (275aa)
hypothetical protein Tax=AR11
rifcsphigho2_02_scaffold_6910_4
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(2041..2253)
DNA (213bp) protein (71aa)
id=5044625 Tax=CG_Woesearch_03
id=5044625 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_6910_5
AR11, Woesearchaeaota, DPANN, Archaea

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comp(2262..2831)
DNA (570bp) protein (190aa)
hypothetical protein Tax=AR11
rifcsphigho2_02_scaffold_6910_6
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


3159..3686
DNA (528bp) protein (176aa)
Ribosomal protein L16 Tax=AR11
50S ribosomal protein L10e id=5800536 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl10e; 50S ribosomal protein L10e
rifcsphigho2_02_scaffold_6910_7
unknown

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comp(3683..3883)
DNA (201bp) protein (67aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6910_8
Vibrio vulnificus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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4081..4929
DNA (849bp) protein (283aa)
mechanosensitive ion channel protein n=1 Tax=Vibrio vulnificus RepID=UPI00037EB6B2
small-conductance mechanosensitive channel
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:BAC95620.1}; TaxID=196600 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio vulni
rifcsphigho2_02_scaffold_6910_9
R_SM2F11_43_23, SM2F11, Bacteria

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5011..5769
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI000380FF13
HflC; stomatin-like transmembrane protein Tax=RIFCSPHIGHO2_01_FULL_SM2F11_43_23_curated
membrane protein
rifcsphigho2_02_scaffold_6910_10
unknown

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5826..6269
DNA (444bp) protein (148aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6910_11
unknown

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6273..6644
DNA (372bp) protein (124aa)
hypothetical protein
rifcsphigho2_02_scaffold_6910_12
unknown

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6679..7059
DNA (381bp) protein (127aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6910_13
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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7118..7657
DNA (540bp) protein (180aa)
30S ribosomal protein S6e; K02991 small subunit ribosomal protein S6e Tax=GWA2_WOR_2_47_8_curated
SSU ribosomal protein S6E id=5799714 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S6
rifcsphigho2_02_scaffold_6910_14

Not on your lists


7718..9016
DNA (1299bp) protein (433aa)
Translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:KHO51155.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Translation initiation factor 2 subunit gamma id=5800779 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Translation initiation factor 2 subunit gamma
rifcsphigho2_02_scaffold_6910_15

Not on your lists

9081..9341
DNA (261bp) protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS53547.1}; TaxID=1618822 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_28.;"
rifcsphigho2_02_scaffold_6910_16

Not on your lists

9280..9606
DNA (327bp) protein (109aa)
Putative uncharacterized protein id=5048508 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45542.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
RelE/StbE family addiction module toxin
rifcsphigho2_02_scaffold_6910_17
unknown

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comp(9667..10356)
DNA (690bp) protein (230aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6910_18
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

comp(10334..10948)
DNA (615bp) protein (205aa)
UPI00006C21E7 related cluster n=1 Tax=unknown RepID=UPI00006C21E7
TPR repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
TPR domain protein
rifcsphigho2_02_scaffold_6910_19
unknown

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11212..11706
DNA (495bp) protein (165aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6910_20
unknown

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comp(11714..12394)
DNA (681bp) protein (227aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6910_21
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

12609..12770
DNA (162bp) protein (54aa)
Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_02_scaffold_6910_22
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

12767..15439
DNA (2673bp) protein (891aa)
cellulose 1,4-beta-cellobiosidase (EC:3.2.1.91); K01225 cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91] Tax=CG_Woesearch_02
id=5048012 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
alpha amylase
CytoplasmicMembrane -Fibronectin type 3 domain not an amylase Cindy Castelle (4/24/17)
Displaying 22 items

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