ggKbase home page

rifcsphigho2_02_scaffold_7007

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_7007_1
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

144..1031
DNA (888bp) protein (296aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=CG_Woesearch_02
Methionine aminopeptidase id=5799823 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Methionine aminopeptidase
rifcsphigho2_02_scaffold_7007_2
unknown

Not on your lists

comp(1039..1290)
DNA (252bp) protein (84aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_3
unknown

Not on your lists

1292..1486
DNA (195bp) protein (65aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_4
unknown

Not on your lists


comp(1898..3169)
DNA (1272bp) protein (424aa)
Histidine--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVR1_9BACT id=5103662 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Histidine--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVR1_9BACT Tax=AR20
Histidine-tRNA ligase
rifcsphigho2_02_scaffold_7007_5
unknown

Not on your lists

comp(3236..4333)
DNA (1098bp) protein (366aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_6
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4595..5548)
DNA (954bp) protein (318aa)
rihA_2; pyrimidine-specific ribonucleoside hydrolase RihA (EC:3.2.-.-)
hypothetical protein n=1 Tax=Caldibacillus debilis RepID=UPI00037AD935
Inosine-uridine preferring nucleoside hydrolase family protein {ECO:0000313|EMBL:CCF12357.1}; TaxID=1118154 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" sourc
rifcsphigho2_02_scaffold_7007_7

Not on your lists

comp(5803..6600)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00035F8ED2
Marine sediment metagenome DNA, contig: S01H4_C02065 {ECO:0000313|EMBL:GAG55979.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
rifcsphigho2_02_scaffold_7007_8
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

Not on your lists

comp(6600..7301)
DNA (702bp) protein (234aa)
phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18] Tax=RBG_13_WOR_3_43_14_curated
phosphoglycolate phosphatase (EC:3.1.3.18)
Putative phosphorylated carbohydrates phosphatase id=3327403 bin=GWA1_Kazan_50_15 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
rifcsphigho2_02_scaffold_7007_9
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(7298..7897)
DNA (600bp) protein (200aa)
O-sialoglycoprotein endopeptidase; K07174 Mn2+-dependent serine/threonine protein kinase [EC:2.7.1.-] Tax=CG_Woesearch_02
O-sialoglycoprotein endopeptidase (EC:2.7.11.1 3.4.24.57); K15904 bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein [EC:2.7.11.1] id=5050151 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Serine/threonine protein kinase, RIO1 family (EC:2.7.1.-)
rifcsphigho2_02_scaffold_7007_10
unknown

Not on your lists

comp(7941..8135)
DNA (195bp) protein (65aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_11
unknown

Not on your lists

comp(8237..8443)
DNA (207bp) protein (69aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_trna_1
unknown

Not on your lists

comp(8446..8518)
DNA (73bp)
transferRNA
rifcsphigho2_02_scaffold_7007_12
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(8564..9355)
DNA (792bp) protein (264aa)
rps3ae; 30S ribosomal protein S3AE; K02984 small subunit ribosomal protein S3Ae Tax=AR11
Ribosomal protein S3AE id=5799806 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S3Ae
rifcsphigho2_02_scaffold_7007_13
unknown

Not on your lists

9410..9856
DNA (447bp) protein (149aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_14
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9853..11748)
DNA (1896bp) protein (632aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=AR11
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=3 Tax=Thermoanaerobacter RepID=B0KAG9_THEP3
rifcsphigho2_02_scaffold_7007_15
unknown

Not on your lists

comp(12337..12504)
DNA (168bp) protein (56aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_16
GWC2_Verrucomicrobia_42_7_curated, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12764..13741
DNA (978bp) protein (326aa)
SpoVT/AbrB protein
phosphate uptake regulator PhoU Tax=GWC2_Verrucomicrobia_42_7_curated
Putative uncharacterized protein id=5799582 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_7007_17
CG_CPR16-01, CG_CPR16, Bacteria

Not on your lists

comp(13958..15049)
DNA (1092bp) protein (364aa)
purM; phosphoribosylaminoimidazole synthetase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=CG_CPR16-01
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S0W8_FERPA
Phosphoribosylformylglycinamidine cyclo-ligase
rifcsphigho2_02_scaffold_7007_18
unknown

Not on your lists

comp(15073..15345)
DNA (273bp) protein (91aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_19

Not on your lists

comp(15656..17824)
DNA (2169bp) protein (723aa)
Putative copper amine oxidase-like protein id=5800765 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF62095.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
copper amine oxidase-like protein
rifcsphigho2_02_scaffold_7007_20
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17928..18698)
DNA (771bp) protein (257aa)
TPR Domain containing protein id=4282605 bin=GWC2_Deltaproteobacteria_42_51 species=Tetrahymena thermophila genus=Tetrahymena taxon_order=Hymenostomatida taxon_class=Oligohymenophorea phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
TPR Domain containing protein Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
rifcsphigho2_02_scaffold_7007_21
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(18768..20183)
DNA (1416bp) protein (472aa)
Tax=AR17
rifcsphigho2_02_scaffold_7007_22

Not on your lists

comp(20205..21665)
DNA (1461bp) protein (487aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN00819.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative peptidase family M23/M37 id=5048834 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_7007_23
RBG_16_OP11_43_9_curated, Microgenomates, Bacteria

Not on your lists

comp(21662..22687)
DNA (1026bp) protein (342aa)
transmembrane_regions 7..29 Tax=RBG_16_OP11_43_9_curated
transmembrane_regions 7..29 id=43575 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
rifcsphigho2_02_scaffold_7007_24
unknown

Not on your lists

22804..23451
DNA (648bp) protein (216aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_25

Not on your lists

comp(23448..24083)
DNA (636bp) protein (212aa)
ArsR family transcriptional regulator id=5050187 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ArsR family transcriptional regulator {ECO:0000313|EMBL:KHO44968.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_7007_26
unknown

Not on your lists

comp(24424..24906)
DNA (483bp) protein (161aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7007_27
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(24914..26215)
DNA (1302bp) protein (434aa)
type IIS restriction enzyme Eco57I (endonuclease Eco57I) (EC:3.1.21.4) Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
methyltransferase (EC:2.1.1.-)
BpmI endonuclease-methyltransferase fusion protein type IIG id=1714113 bin=GWB2_Ignavibacteria_35_12 species=uncultured archaeon GZfos37D1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Displaying 28 items

View Taxonomy