ggKbase home page

rifcsphigho2_02_scaffold_19439

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_19439_1
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists


2..424
DNA (423bp) protein (141aa)
50S ribosomal protein L10 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VVQ4_9EURY
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Therm
rplP0; acidic ribosomal protein P0
rifcsphigho2_02_scaffold_19439_2

Not on your lists

447..752
DNA (306bp) protein (102aa)
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L12; K02869 large subunit ribosomal protein L12 id=5045961 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L12P
rifcsphigho2_02_scaffold_19439_3

Not on your lists

799..1653
DNA (855bp) protein (285aa)
hypothetical protein id=5047527 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45736.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_19439_4
unknown

Not on your lists

comp(1676..2149)
DNA (474bp) protein (158aa)

This feature has no annotations

rifcsphigho2_02_scaffold_19439_5
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(2239..2448)
DNA (210bp) protein (70aa)
30S ribosomal protein S27ae n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RS27A_THEKO
30S ribosomal protein S27ae
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus nautili.
rifcsphigho2_02_scaffold_19439_6

Not on your lists

comp(2451..2759)
DNA (309bp) protein (103aa)
rps24e; 30S ribosomal protein S24E; K02974 small subunit ribosomal protein S24e id=5047529 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rps24e; 30S ribosomal protein S24e
rifcsphigho2_02_scaffold_19439_7

Not on your lists

comp(2771..2956)
DNA (186bp) protein (62aa)
rpoE2; DNA-directed RNA polymerase subunit E'; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] id=5049217 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:KHO45208.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO45208.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
DNA-directed RNA polymerase, subunit E
rifcsphigho2_02_scaffold_19439_8
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists


comp(2965..3555)
DNA (591bp) protein (197aa)
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:ENO11844.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-
DNA-directed RNA polymerase subunit E
rifcsphigho2_02_scaffold_19439_9
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(3746..4135)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037FD838
hypothetical protein; K07158 Tax=RBG_13_Woesearchaeota_36_6_curated
Nucleotide binding protein, containing PIN domain
rifcsphigho2_02_scaffold_19439_10
unknown

Not on your lists

4309..5343
DNA (1035bp) protein (345aa)

This feature has no annotations

rifcsphigho2_02_scaffold_19439_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

5388..6539
DNA (1152bp) protein (384aa)
hypothetical protein; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-] Tax=CG_Woesearch_02
rRNA (Guanine-N(2)-)-methyltransferase id=5800237 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_19439_12
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

6685..6999
DNA (315bp) protein (105aa)
id=5048700 Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
id=5048700 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_19439_13

Not on your lists

comp(6996..7130)
DNA (135bp) protein (45aa)
Marine sediment metagenome DNA, contig: S01H1_S03205 {ECO:0000313|EMBL:GAF89404.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_19439_14
GWB1_OP11_40_9_partial, Microgenomates, Bacteria

Not on your lists

7255..7764
DNA (510bp) protein (170aa)
Serine/Threonine protein kinase with TPR repeats n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZDZ7_NODSP
Putative uncharacterized protein Tax=GWB1_OP11_40_9_partial
TPR domain protein
rifcsphigho2_02_scaffold_19439_15
unknown

Not on your lists

7781..8434
DNA (654bp) protein (218aa)

This feature has no annotations

Displaying 15 items

View Taxonomy