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rifcsphigho2_02_scaffold_5964

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5964_1

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comp(1..297)
DNA (297bp) protein (99aa)
Small subunit ribosomal protein S3 {ECO:0000313|EMBL:KHO55758.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
small subunit ribosomal protein S3
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=5241356 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_5964_2

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comp(294..764)
DNA (471bp) protein (157aa)
50S ribosomal protein L22P, large subunit ribosomal protein L22
rpl22p; 50S ribosomal protein L22P; K02890 large subunit ribosomal protein L22 id=5241355 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_5964_3

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comp(798..1199)
DNA (402bp) protein (134aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
small subunit ribosomal protein S19
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=5241354 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_5964_4

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comp(1213..1923)
DNA (711bp) protein (237aa)
large subunit ribosomal protein L2
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 id=5241353 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_5964_5

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comp(1936..2223)
DNA (288bp) protein (96aa)
large subunit ribosomal protein L23
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 id=5241352 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_5964_6

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comp(2220..3023)
DNA (804bp) protein (268aa)
large subunit ribosomal protein L4e
LSU ribosomal protein l4p; K02930 large subunit ribosomal protein L4e id=5241351 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rifcsphigho2_02_scaffold_5964_7

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comp(3041..4195)
DNA (1155bp) protein (385aa)
large subunit ribosomal protein L3
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5241350 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_5964_8
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(4477..9561)
DNA (5085bp) protein (1695aa)
Uncharacterized protein n=1 Tax=Bacillus cereus BAG2X1-1 RepID=J8SMN7_BACCE
hypothetical protein Tax=CG_Woesearch_01
Minor extracellular protease
rifcsphigho2_02_scaffold_5964_9
unknown

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9730..9879
DNA (150bp) protein (50aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5964_10
unknown

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9938..10444
DNA (507bp) protein (169aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5964_11
unknown

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comp(10636..10764)
DNA (129bp) protein (43aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5964_12
unknown

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comp(10817..12091)
DNA (1275bp) protein (425aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5964_13
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(12180..12527)
DNA (348bp) protein (116aa)
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2S2U4_HALTV
MazF family transcriptional regulator
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:ADB63691.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterri
rifcsphigho2_02_scaffold_5964_14

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comp(12517..12792)
DNA (276bp) protein (92aa)
Marine sediment metagenome DNA, contig: S01H4_S16273 {ECO:0000313|EMBL:GAH14011.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_5964_15
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(12985..14055)
DNA (1071bp) protein (357aa)
Tax=BJP_IG2103_Bacteroidetes_41_9
rifcsphigho2_02_scaffold_5964_16
unknown

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comp(14074..14232)
DNA (159bp) protein (53aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5964_17
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14515..14997)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9Z5_METEZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI74417.1}; Flags: Precursor;; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" sourc
rifcsphigho2_02_scaffold_5964_18
unknown

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comp(15217..16794)
DNA (1578bp) protein (526aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5964_19
unknown

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comp(16808..18493)
DNA (1686bp) protein (562aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5964_20
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

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comp(18624..18896)
DNA (273bp) protein (91aa)
hypothetical protein Tax=GWB2_Planctomycetes_41_19_curated
Addiction module toxin, RelE/StbE family id=5047353 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsphigho2_02_scaffold_5964_21
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(18889..19131)
DNA (243bp) protein (81aa)
hypothetical protein Tax=CG_Woesearch_01
hypothetical protein id=5044607 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_5964_22
RLO_OD1_41_13, Parcubacteria, Bacteria

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comp(19203..19424)
DNA (222bp) protein (74aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003776895
hypothetical protein
Displaying 22 items

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