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rifcsphigho2_02_scaffold_11882

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_11882_1

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comp(6..425)
-----------------
DNA (420bp)
protein (140aa)
30S ribosomal protein S12 {ECO:0000256|RuleBase:RU004490}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5044114 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S12
rifcsphigho2_02_scaffold_11882_2
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(435..821)
-----------------
DNA (387bp)
protein (129aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000374B7B8
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A Tax=CG_Woesearch_01
hypothetical protein
rifcsphigho2_02_scaffold_11882_3
AR9, Woesearchaeaota, DPANN, Archaea

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comp(869..1150)
-----------------
DNA (282bp)
protein (94aa)
hypothetical protein; K02908 large subunit ribosomal protein L30e Tax=AR9
hypothetical protein; K02908 large subunit ribosomal protein L30e id=5043968 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_11882_4

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comp(1170..2315)
-----------------
DNA (1146bp)
protein (382aa)
DNA-directed RNA polymerase subunit A {ECO:0000313|EMBL:KHO49282.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO49282.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
DNA-directed RNA polymerase subunit A'' (EC:2.7.7.6); K03042 DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] id=5043969 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase subunit A'' (EC:2.7.7.6)
rifcsphigho2_02_scaffold_11882_5

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comp(2315..4888)
-----------------
DNA (2574bp)
protein (858aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
DNA-directed RNA polymerase subunit A' (EC:2.7.7.48); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5043970 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_11882_6
AR9, Woesearchaeaota, DPANN, Archaea

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comp(4927..6729)
-----------------
DNA (1803bp)
protein (601aa)
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] Tax=AR9
DNA-directed RNA polymerase id=5800701 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_11882_7
AR9, Woesearchaeaota, DPANN, Archaea

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comp(6731..8206)
-----------------
DNA (1476bp)
protein (492aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] Tax=AR9
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] id=5043972 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_11882_8
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8209..8445)
-----------------
DNA (237bp)
protein (79aa)
DNA-directed RNA polymerase, subunit h (EC:2.7.7.6); K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] Tax=AR9
DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HIC4_PYRSN
DNA-directed RNA polymerase subunit H
rifcsphigho2_02_scaffold_11882_trna_2
unknown

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comp(8491..8583)
-----------------
DNA (93bp)
transferRNA
rifcsphigho2_02_scaffold_11882_9
AR6, Pacearchaeaota, DPANN, Archaea

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9388..9756
-----------------
DNA (369bp)
protein (123aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PEX1_9ZZZZ id=5103294 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=AR6
rifcsphigho2_02_scaffold_11882_trna_1
unknown

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9850..9945
-----------------
DNA (96bp)
transferRNA
rifcsphigho2_02_scaffold_11882_10
unknown

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10211..10756
-----------------
DNA (546bp)
protein (182aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11882_11
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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10831..11229
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:EGK84347.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
rifcsphigho2_02_scaffold_11882_12
AR9, Woesearchaeaota, DPANN, Archaea

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11736..12605
-----------------
DNA (870bp)
protein (290aa)
YjeF-like protein family sugar kinase Tax=AR9
carbohydrate kinase
carbohydrate kinase id=5240577 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_11882_13
unknown

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comp(12934..13332)
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

Displaying 15 items

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