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rifcsphigho2_12_scaffold_1295

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_12_scaffold_1295_1
unknown

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1..72
DNA (72bp) protein (24aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1295_2
unknown

Not on your lists

267..593
DNA (327bp) protein (109aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1295_3

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764..2788
DNA (2025bp) protein (675aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037CD2F5
DNA replication initiator Cdc21/Cdc54
DNA replication initiator Cdc21/Cdc54 {ECO:0000313|EMBL:AJF62505.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_12_scaffold_1295_4

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2790..3401
DNA (612bp) protein (204aa)
id=5048854 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO53923.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsphigho2_12_scaffold_1295_5

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3525..3914
DNA (390bp) protein (130aa)
Translation initiation factor 2 subunit beta n=2 Tax=Methanothermobacter RepID=IF2B_METTH id=5103227 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Translation initiation factor 2 subunit beta
Translation initiation factor 2 subunit beta {ECO:0000256|HAMAP-Rule:MF_00232}; aIF2-beta {ECO:0000256|HAMAP-Rule:MF_00232}; eIF-2-beta {ECO:0000256|HAMAP-Rule:MF_00232}; TaxID=1579378 species="Archae
rifcsphigho2_12_scaffold_1295_6

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3914..4666
DNA (753bp) protein (251aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:KHO51075.1}; EC=3.1.11.2 {ECO:0000313|EMBL:KHO51075.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
exodeoxyribonuclease III Xth (EC:4.2.99.18)
Exodeoxyribonuclease III Xth n=1 Tax=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) RepID=A6VFU8_METM7
rifcsphigho2_12_scaffold_1295_7
GWC2_OD1_39_14, Parcubacteria, Bacteria

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comp(4669..5067)
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR08306.1}; TaxID=1618922 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_39_14.;"
id=5803682 bin=OD1_GWC2_34_28 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
rifcsphigho2_12_scaffold_1295_8
unknown

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5160..5387
DNA (228bp) protein (76aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1295_9
GWB2_OD1_ACD81_rel_46_69, Wolfebacteria, Parcubacteria, Bacteria

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5359..5496
DNA (138bp) protein (46aa)
Mannose-6-phosphate isomerase, type II {ECO:0000313|EMBL:KKU42610.1}; TaxID=1619009 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWB2_46_69.;"
rifcsphigho2_12_scaffold_1295_10

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5544..5858
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJD2_PYRSN id=5103229 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62510.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_12_scaffold_1295_11
AR18, Woesearchaeaota, DPANN, Archaea

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5891..6271
DNA (381bp) protein (127aa)
translation initiation factor eIF-1A; K03236 translation initiation factor 1A id=5048850 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
translation initiation factor eIF-1A; K03236 translation initiation factor 1A Tax=AR18
Translation initiation factor 1A
rifcsphigho2_12_scaffold_1295_12
AR18, Woesearchaeaota, DPANN, Archaea

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6307..7008
DNA (702bp) protein (234aa)
serine/threonine protein kinase (EC:2.7.11.-); K07178 RIO kinase 1 [EC:2.7.11.1] id=5048847 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
serine/threonine protein kinase (EC:2.7.11.-); K07178 RIO kinase 1 [EC:2.7.11.1] Tax=AR18
hypothetical protein
rifcsphigho2_12_scaffold_1295_13

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7001..7537
DNA (537bp) protein (179aa)
KH domain protein; K06961 ribosomal RNA assembly protein id=5048469 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal RNA assembly protein {ECO:0000313|EMBL:KHO45503.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_12_scaffold_1295_14

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7596..9167
DNA (1572bp) protein (524aa)
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] id=5048845 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Type 2 DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00322};; Type II DNA topoisomerase VI subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; TaxID=
DNA topoisomerase VI, subunit B
rifcsphigho2_12_scaffold_1295_15
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9157..10260
DNA (1104bp) protein (368aa)
Type 2 DNA topoisomerase 6 subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00132};; Type II DNA topoisomerase VI subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; TaxID=
Type 2 DNA topoisomerase 6 subunit A n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HE24_ANADF
DNA topoisomerase VI subunit A
rifcsphigho2_12_scaffold_1295_16
RIFOXYB2_FULL_WOR_2_38_16_curated, WOR-2, Bacteria

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10581..11099
DNA (519bp) protein (173aa)
SET domain protein id=3623631 bin=GWF2_OP3_38_59 species=alpha proteobacterium HIMB59 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
SET domain-containing protein Tax=RIFOXYB2_FULL_WOR_2_38_16_curated
nuclear protein SET
rifcsphigho2_12_scaffold_1295_17
unknown

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11333..11560
DNA (228bp) protein (76aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1295_18

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comp(11639..13291)
DNA (1653bp) protein (551aa)
Methionyl-tRNA synthetase {ECO:0000313|EMBL:KHO52380.1}; EC=6.1.1.10 {ECO:0000313|EMBL:KHO52380.1};; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=5044318 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
methionyl-tRNA synthetase (EC:6.1.1.10)
rifcsphigho2_12_scaffold_1295_19
AR20, Woesearchaeaota, DPANN, Archaea

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13722..14219
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036998A2
hypothetical protein
Tax=AR20
rifcsphigho2_12_scaffold_1295_20

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comp(14226..14858)
DNA (633bp) protein (211aa)
Beta-lactamase domain-containing protein (GloB) {ECO:0000313|EMBL:AIF08528.1}; EC=3.1.2.6 {ECO:0000313|EMBL:AIF08528.1};; TaxID=1456118 species="Archaea; Thaumarchaeota; environmental samples.;" sourc
beta-lactamase domain-containing protein id=14427181 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Beta-lactamase domain protein
rifcsphigho2_12_scaffold_1295_21

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15011..15997
DNA (987bp) protein (329aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5046839 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L3
rifcsphigho2_12_scaffold_1295_22

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15994..16752
DNA (759bp) protein (253aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000313|EMBL:AJF62534.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_12_scaffold_1295_23

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16754..17011
DNA (258bp) protein (86aa)
50S ribosomal protein L23P n=3 Tax=Thermococcus RepID=RL23_PYRKO id=5103254 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L23P
50S ribosomal protein L23P {ECO:0000313|EMBL:AJF62535.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_12_scaffold_1295_24
AR18, Woesearchaeaota, DPANN, Archaea

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17013..17708
DNA (696bp) protein (232aa)
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 id=5046842 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 Tax=AR18
50S ribosomal protein L2
rifcsphigho2_12_scaffold_1295_25
AR17, Woesearchaeaota, DPANN, Archaea

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17710..18108
DNA (399bp) protein (133aa)
30S ribosomal protein S19P n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LHB1_THEBM
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=AR17
30S ribosomal protein S15e
rifcsphigho2_12_scaffold_1295_26

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18105..18587
DNA (483bp) protein (161aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22
rifcsphigho2_12_scaffold_1295_27

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18584..19399
DNA (816bp) protein (272aa)
30S ribosomal protein S3 {ECO:0000313|EMBL:AJS12264.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps3p; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=5046845 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S3
rifcsphigho2_12_scaffold_1295_28
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists


19380..19592
DNA (213bp) protein (71aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=AR17
rifcsphigho2_12_scaffold_1295_29
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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19589..19924
DNA (336bp) protein (112aa)
Protein translation factor SUI1 homolog n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RGH6_ARCPA
translation initiation factor SUI1
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae;
rifcsphigho2_12_scaffold_1295_30

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19921..20184
DNA (264bp) protein (88aa)
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=5046848 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S17P
Displaying items 1-30 of 56 in total

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