ggKbase home page

rifcsphigho2_12_scaffold_1880

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_12_scaffold_1880_1
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

Not on your lists

comp(1..699)
DNA (699bp) protein (233aa)
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4); K01974 RNA 3'-terminal phosphate cyclase [EC:6.5.1.4] Tax=RBG_13_Euryarchaeota_31_8_curated
RNA 3'-phosphate cyclase (EC:6.5.1.4)
RNA 3''-phosphate cyclase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VWW2_9EURY
rifcsphigho2_12_scaffold_1880_2
CG_Berkel_03, Berkelbacteria, Bacteria

Not on your lists

869..1354
DNA (486bp) protein (162aa)
Cytidine deaminase-like 11..137 Tax=CG_Berkel_03
Cytidine deaminase-like 11..137 id=131896 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
rifcsphigho2_12_scaffold_1880_3
unknown

Not on your lists

comp(1424..1645)
DNA (222bp) protein (74aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1880_4
unknown

Not on your lists

1765..1980
DNA (216bp) protein (72aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1880_5
Nonlabens ulvanivorans, Nonlabens, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2046..2372
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL76794.1}; TaxID=906888 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens ulvanivorans.;
rifcsphigho2_12_scaffold_1880_6
unknown

Not on your lists

2577..2813
DNA (237bp) protein (79aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1880_7
R_OD1_Magasanikbacteria_50_9b, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

3244..3933
DNA (690bp) protein (230aa)
aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13] Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_50_9b_curated
Uncharacterized protein id=5799941 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
aspartate racemase
rifcsphigho2_12_scaffold_1880_8

Not on your lists

3994..4350
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PK80_9ZZZZ id=5103559 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62840.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_12_scaffold_1880_9
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(4916..5086)
DNA (171bp) protein (57aa)
Tax=AR18
rifcsphigho2_12_scaffold_1880_10

Not on your lists

comp(5034..5432)
DNA (399bp) protein (133aa)
hypothetical protein
id=5045766 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54433.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifcsphigho2_12_scaffold_1880_11
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(5413..6006)
DNA (594bp) protein (198aa)
hypothetical protein
id=5045765 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsphigho2_12_scaffold_1880_12
unknown

Not on your lists

6047..6226
DNA (180bp) protein (60aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1880_13

Not on your lists

comp(6177..6530)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TTB9_METAC id=5103800 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KKL71509.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
rifcsphigho2_12_scaffold_1880_14

Not on your lists

comp(6527..6805)
DNA (279bp) protein (93aa)
Marine sediment metagenome DNA, contig: S03H2_L04486 {ECO:0000313|EMBL:GAH38493.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
hypothetical protein id=5240769 bin=GW2011_AR10_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_12_scaffold_1880_15
unknown

Not on your lists

comp(6909..7220)
DNA (312bp) protein (104aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1880_16

Not on your lists

7418..7669
DNA (252bp) protein (84aa)
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein
ferredoxin; K05337 ferredoxin id=5048736 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ferredoxin {ECO:0000313|EMBL:KHO45399.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_12_scaffold_1880_17
unknown

Not on your lists

7650..7763
DNA (114bp) protein (38aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1880_18
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(7773..8693)
DNA (921bp) protein (307aa)
Putative uncharacterized protein id=5041674 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Putative uncharacterized protein Tax=AR4
rifcsphigho2_12_scaffold_1880_19
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists


8722..8943
DNA (222bp) protein (74aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6); K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] Tax=CG_Woesearch_03
DNA-directed RNA polymerase subunit N (EC:2.7.7.6); K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] id=5045700 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase subunit N
rifcsphigho2_12_scaffold_1880_20
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

8944..9138
DNA (195bp) protein (65aa)
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-5
rifcsphigho2_12_scaffold_1880_21

Not on your lists

9246..9743
DNA (498bp) protein (166aa)
Uncharacterized protein id=5048328 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54046.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsphigho2_12_scaffold_1880_22
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9723..10046)
DNA (324bp) protein (108aa)
Ribonuclease P protein component 4
id=5048326 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsphigho2_12_scaffold_1880_23
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

10249..11367
DNA (1119bp) protein (373aa)
putative Dihydroorotate dehydrogenase (EC:1.3.98.1) Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] id=5090692 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Dihydroorotate dehydrogenase 2
rifcsphigho2_12_scaffold_1880_24
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

11401..13254
DNA (1854bp) protein (618aa)
id=5048027 Tax=RBG_13_Pacearchaeota_36_9_curated
id=5047272 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
MAM protein
rifcsphigho2_12_scaffold_1880_25
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

13760..15154
DNA (1395bp) protein (465aa)
Uncharacterized protein n=4 Tax=Pyrococcus RepID=Q8U211_PYRFU id=5103802 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
ATPase; K06865 ATPase Tax=CG_Woesearch_02
hypothetical protein
rifcsphigho2_12_scaffold_1880_26
unknown

Not on your lists

15187..15573
DNA (387bp) protein (129aa)

This feature has no annotations

rifcsphigho2_12_scaffold_1880_27
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

15593..16039
DNA (447bp) protein (149aa)
hypothetical protein; K09005 hypothetical protein Tax=AR19
hypothetical protein
hypothetical protein; K09005 hypothetical protein id=982846 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
rifcsphigho2_12_scaffold_1880_28

Not on your lists

comp(16036..16317)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZET3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD42913.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
fer2; ferredoxin [2Fe-2S] IV
rifcsphigho2_12_scaffold_1880_29
GWA2_OD1_37_10, Parcubacteria, Bacteria

Not on your lists

comp(16320..17045)
DNA (726bp) protein (242aa)
Oxidoreductase FAD/NAD(P)-binding protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT05_KORVE
Oxidoreductase FAD/NAD(P)-binding domain protein Tax=GWA2_OD1_37_10
oxidoreductase FAD/NAD(P)-binding protein
rifcsphigho2_12_scaffold_1880_30
R_RIF_OD1_06_34_10, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(17005..17583)
DNA (579bp) protein (193aa)
erpA; iron-sulfur cluster insertion protein erpA Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_34_10_curated
erpA; iron-sulfur cluster insertion protein erpA id=5050418 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Iron-sulfur cluster assembly accessory protein
Displaying items 1-30 of 49 in total

View Taxonomy