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rifcsphigho2_12_scaffold_20414

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_12_scaffold_20414_1
AR17, Woesearchaeaota, DPANN, Archaea

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comp(6..479)
DNA (474bp) protein (158aa)
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 Tax=AR17
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 id=5051521 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rps11p; 30S ribosomal protein S11P
rifcsphigho2_12_scaffold_20414_2
AR18, Woesearchaeaota, DPANN, Archaea

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comp(482..1105)
DNA (624bp) protein (208aa)
rps4p; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=5051520 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rps4p; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=AR18
30S ribosomal protein S4
rifcsphigho2_12_scaffold_20414_3

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comp(1108..1578)
DNA (471bp) protein (157aa)
30S ribosomal protein S13
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=5051519 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifcsphigho2_12_scaffold_20414_4
R_RIF_OD1_03_45_10, RIF-OD1-3, Parcubacteria, Bacteria

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1667..2290
DNA (624bp) protein (208aa)
transmembrane_regions 133..155 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_03_45_10_curated
transmembrane_regions 133..155 id=53589 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rifcsphigho2_12_scaffold_20414_5
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2272..2823)
DNA (552bp) protein (184aa)
hypothetical protein; K07572 putative nucleotide binding protein id=5051518 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K07572 putative nucleotide binding protein Tax=AR18
DNA-binding protein
rifcsphigho2_12_scaffold_20414_6
unknown

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comp(2836..3180)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037E07C5
Conserved protein n=2 Tax=Methanothermobacter RepID=O27379_METTH Tax=AR20
hypothetical protein
rifcsphigho2_12_scaffold_20414_7

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comp(3158..3469)
DNA (312bp) protein (104aa)
50S ribosomal protein L21e; K02889 large subunit ribosomal protein L21e id=5051516 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
50S ribosomal protein L21e
rifcsphigho2_12_scaffold_20414_8
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(3505..3798)
DNA (294bp) protein (98aa)
hypothetical protein
id=5103695 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_12_scaffold_20414_9

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comp(3865..5508)
DNA (1644bp) protein (548aa)
Histone acetyltransferase Elp3 like protein; K07739 elongator complex protein 3 [EC:2.3.1.48] id=5044155 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Elongator complex protein 3 {ECO:0000313|EMBL:KHO54717.1}; EC=2.3.1.48 {ECO:0000313|EMBL:KHO54717.1};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Histone acetyltransferase Elp3 like protein
rifcsphigho2_12_scaffold_20414_10

Not on your lists

5671..6570
DNA (900bp) protein (300aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-] id=5044152 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Protease IV {ECO:0000313|EMBL:KHO54714.1}; EC=3.4.21.- {ECO:0000313|EMBL:KHO54714.1};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Signal peptide peptidase SppA, 36K type
rifcsphigho2_12_scaffold_20414_11
unknown

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6726..7331
DNA (606bp) protein (202aa)

This feature has no annotations

Displaying 11 items

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