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rifoxya1_full_scaffold_2474

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxya1_full_scaffold_2474_1

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164..730
-----------------
DNA (567bp)
protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51092.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein; K07572 putative nucleotide binding protein alias=gwa2_scaffold_8887_12 id=5051518 tax=GW2011_AR18 species=unknown genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota organism_desc=gwa2_.30_20c
DNA-binding protein
rifoxya1_full_scaffold_2474_2
unknown

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comp(868..1071)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

rifoxya1_full_scaffold_2474_3
unknown

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1104..1484
-----------------
DNA (381bp)
protein (127aa)

This feature has no annotations

rifoxya1_full_scaffold_2474_4
unknown

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comp(1481..1669)
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

rifoxya1_full_scaffold_2474_5
unknown

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comp(1666..1830)
-----------------
DNA (165bp)
protein (55aa)

This feature has no annotations

rifoxya1_full_scaffold_2474_6
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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1916..2491
-----------------
DNA (576bp)
protein (192aa)
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:ENO11844.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-
DNA-directed RNA polymerase subunit E
rifoxya1_full_scaffold_2474_7
CG_Micra_06, Micraarchaeota, Archaea

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2496..2678
-----------------
DNA (183bp)
protein (61aa)
DNA-directed RNA polymerase subunit E, RpoE2; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] Tax=CG_Micra_06
Transcription elongation factor Spt4 n=1 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7DAC2_STAHD
DNA-directed RNA polymerase subunit E, RpoE2
rifoxya1_full_scaffold_2474_8
Aciduliprofundum sp. MAR08-339, Aciduliprofundum, Euryarchaeota, Archaea

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2680..2997
-----------------
DNA (318bp)
protein (106aa)
30S ribosomal protein S24e n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HI00_ACIS0
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=673860 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum sp. (strain MAR0
ribosomal protein S24E
rifoxya1_full_scaffold_2474_9
AR18, Woesearchaeaota, DPANN, Archaea

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3069..3251
-----------------
DNA (183bp)
protein (61aa)
30S ribosomal protein S27ae; K02977 small subunit ribosomal protein S27Ae Tax=AR18
30S ribosomal protein S27ae; K02977 small subunit ribosomal protein S27Ae alias=gwa2_scaffold_3934_72 id=5049718 tax=GW2011_AR18 species=unknown genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S27ae
rifoxya1_full_scaffold_2474_10
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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3254..4225
-----------------
DNA (972bp)
protein (324aa)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZJP2_THELI
Protein kinase {ECO:0000313|EMBL:EHR79834.1}; TaxID=523849 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus litoralis (strain ATCC 51
protein kinase
rifoxya1_full_scaffold_2474_11
unknown

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comp(4222..4524)
-----------------
DNA (303bp)
protein (101aa)

This feature has no annotations

rifoxya1_full_scaffold_2474_12

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4654..5292
-----------------
DNA (639bp)
protein (213aa)
Large subunit ribosomal protein L1 {ECO:0000313|EMBL:KHO45733.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L1 alias=gwa2_scaffold_2064_37 id=5047524 tax=GW2011_AR3 species=Methanothermococcus thermolithotrophicus genus=Methanothermococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_desc=gwa2_.43_13b
rpl1P; 50S ribosomal protein L1P
DPANN archaea Jill Banfield (10/31/14)
rifoxya1_full_scaffold_2474_13
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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5289..6140
-----------------
DNA (852bp)
protein (284aa)
50S ribosomal protein L10 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VVQ4_9EURY
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Therm
acidic ribosomal protein P0 RplPO
Probably DPANN Archaeon Jill Banfield (11/27/14)
rifoxya1_full_scaffold_2474_14

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6145..6444
-----------------
DNA (300bp)
protein (100aa)
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
LSU ribosomal protein L12AE alias=gwa2_scaffold_1391_4 id=5045961 tax=GW2011_AR4 species=unknown genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota organism_desc=gwa2_.45_18
rpl12p; 50S ribosomal protein L12
rifoxya1_full_scaffold_2474_15
AR17, Woesearchaeaota, DPANN, Archaea

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6467..7282
-----------------
DNA (816bp)
protein (272aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003820D3D
Putative uncharacterized protein Tax=AR17
hypothetical protein
rifoxya1_full_scaffold_2474_16
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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7341..9824
-----------------
DNA (2484bp)
protein (828aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256
Alanine--tRNA ligase n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BBG5_METIK rbh
alanyl-tRNA synthetase
rifoxya1_full_scaffold_2474_17

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comp(9870..10514)
-----------------
DNA (645bp)
protein (215aa)
Large subunit ribosomal protein L11 {ECO:0000313|EMBL:KHO46636.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 alias=gwa2_scaffold_256_84 id=5043660 tax=GW2011_AR3 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L11
rifoxya1_full_scaffold_2474_18
unknown

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comp(10583..11101)
-----------------
DNA (519bp)
protein (173aa)
LSU ribosomal protein L24A (Rpl24A) n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29713_ARCFU Tax=AR20
LSU ribosomal protein L24A Rpl24A
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG alias=gwa2_scaffold_32_146 id=5040014 tax=GW2011_AR20 species=Archaeoglobus fulgidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_2474_19
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

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comp(11101..11457)
-----------------
DNA (357bp)
protein (119aa)
Protein translocase subunit SecE n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PUG6_METTM
secE; preprotein translocase subunit SecE; K07342 protein transport protein SEC61 subunit gamma and related proteins Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
SecE-related protein
rifoxya1_full_scaffold_2474_20
AR15, Woesearchaeaota, DPANN, Archaea

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comp(11497..12582)
-----------------
DNA (1086bp)
protein (362aa)
Cell division protein FtsZ Tax=AR15
Cell division protein FtsZ alias=AR15_final_v5_1190 id=5800713 tax=GW2011_AR15 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown
Cell division protein FtsZ
rifoxya1_full_scaffold_2474_21
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(12682..13320)
-----------------
DNA (639bp)
protein (213aa)
peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] Tax=CG_Woesearch_02
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A6AAC
Peptidyl-prolyl cis-trans isomerase
rifoxya1_full_scaffold_2474_22
unknown

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13371..13544
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

Displaying 22 items

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