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rifoxya1_full_scaffold_3927

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxya1_full_scaffold_3927_1
unknown

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comp(149..760)
-----------------
DNA (612bp)
protein (204aa)
30S ribosomal protein S2 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS2_NANEQ Tax=AR20
30S ribosomal protein S2
30S ribosomal protein S2 alias=gwa2_scaffold_32_61 id=5039929 tax=GW2011_AR20 species=Nanoarchaeum equitans genus=Nanoarchaeum taxon_order=unknown taxon_class=unknown phylum=Nanoarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3927_2

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comp(764..958)
-----------------
DNA (195bp)
protein (65aa)
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] alias=gwa2_scaffold_1256_59 id=5045738 tax=GW2011_AR18 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_desc=gwa2_.30_20c
hypothetical protein
rifoxya1_full_scaffold_3927_3
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

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comp(989..1771)
-----------------
DNA (783bp)
protein (261aa)
exosome complex exonuclease 2; K12589 exosome complex component RRP42 Tax=RBG_13_Pacearchaeota_33_26_curated
Ribosomal RNA-processing protein RRP42
Ribosomal RNA-processing protein RRP42 alias=gwa2_scaffold_111_115 id=5041550 tax=GW2011_AR20 species=unknown genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3927_4
Altiarchaeum hamiconexum, Altiarchaeum, Altiarchaeales, Euryarchaeota, Archaea

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comp(1841..2581)
-----------------
DNA (741bp)
protein (247aa)
exosome complex exonuclease Rrp41 (EC:2.7.7.56); K11600 exosome complex component RRP41 Tax=Altiarchaeum hamiconexum
exosome complex component Rrp41 (EC:3.1.13.-)
Exosome complex component Rrp41 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T906_9EURY
rifoxya1_full_scaffold_3927_5
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(2583..3269)
-----------------
DNA (687bp)
protein (229aa)
rrp4; exosome complex RNA-binding protein Rrp4; K03679 exosome complex component RRP4 Tax=CG_Woesearch_02
Probable exosome complex RNA-binding protein 1 alias=AR15_final_v5_1276 id=5800799 tax=GW2011_AR15 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota
putative exosome complex RNA-binding protein 1
rifoxya1_full_scaffold_3927_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3266..3997)
-----------------
DNA (732bp)
protein (244aa)
RNA-associated protein n=1 Tax=Thermococcus zilligii RepID=UPI000299FD76
RNA-associated protein; K14574 ribosome maturation protein SDO1 Tax=CG_Woesearch_02
RNA-associated protein
rifoxya1_full_scaffold_3927_7

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comp(3997..4695)
-----------------
DNA (699bp)
protein (233aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372A087
Proteasome subunit alpha
rifoxya1_full_scaffold_3927_8
CG_Micra_06, Micraarchaeota, Archaea

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comp(4692..5042)
-----------------
DNA (351bp)
protein (117aa)
ribonuclease P protein component 2 (EC:3.1.26.5) Tax=CG_Micra_06
rifoxya1_full_scaffold_3927_9
unknown

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comp(5055..5378)
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

rifoxya1_full_scaffold_3927_10
RIFOXYB2_FULL_WOR_1_48_7_curated, WOR-1, Bacteria

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comp(5425..5799)
-----------------
DNA (375bp)
protein (125aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD3_9BACT
hypothetical protein Tax=RIFOXYB2_FULL_WOR_1_48_7_curated
hypothetical protein
rifoxya1_full_scaffold_3927_11
Sulfolobus tokodaii, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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comp(5869..6051)
-----------------
DNA (183bp)
protein (61aa)
50S ribosomal protein L24e n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=RL24E_SULTO
50S ribosomal protein L24e {ECO:0000255|HAMAP-Rule:MF_00773}; TaxID=273063 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.;" source="Sulfolobus tokodaii (strain
50S ribosomal protein L24
rifoxya1_full_scaffold_3927_12

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comp(6051..6308)
-----------------
DNA (258bp)
protein (86aa)
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
30S ribosomal protein S28e
rps28e; 30S ribosomal protein S28; K02979 small subunit ribosomal protein S28e alias=gwa2_scaffold_111_11 id=5041446 tax=GW2011_AR20 species=Aeropyrum pernix genus=Aeropyrum taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota organism_desc=DELETE: see complete genome
rifoxya1_full_scaffold_3927_13
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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comp(6314..6727)
-----------------
DNA (414bp)
protein (138aa)
50S ribosomal protein L7Ae n=10 Tax=Sulfolobus islandicus RepID=RL7A_SULIA
rpl7ae; 50S ribosomal protein L7Ae; K02936 large subunit ribosomal protein L7Ae Tax=CG_Aenigma_01
rpl7ae; 50S ribosomal protein L7Ae
rifoxya1_full_scaffold_3927_14
unknown

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6806..7168
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

rifoxya1_full_scaffold_3927_15
GWC2_OD1_41_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(7143..7523)
-----------------
DNA (381bp)
protein (127aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] alias=gwa2_scaffold_1239_27 id=5045608 tax=GW2011_AR5 species=Pyrococcus furiosus genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota organism_desc=gwa2_.48_18
Glutamate-tRNA ligase {ECO:0000313|EMBL:KKS24572.1}; TaxID=1618755 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_41_8.;"
Glutamate-tRNA ligase
Displaying 15 items

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