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rifcsplowo2_12_scaffold_1342

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_12_scaffold_1342_1
Thermococcus barophilus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(2..967)
DNA (966bp) protein (322aa)
Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; Short=FEN-1 {ECO:0000256|HAMAP-Rule:MF_00614};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00614};; Flap structure-specific endonuclease 1 {ECO:000025
Flap endonuclease 1 n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LMU7_THEBM
flap structure-specific endonuclease
rifcsplowo2_12_scaffold_1342_2

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comp(969..1247)
DNA (279bp) protein (93aa)
Elongation factor 1-beta {ECO:0000256|SAAS:SAAS00044427}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
ef1B; elongation factor 1-beta; K03232 elongation factor 1-beta id=5043735 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ef1B; elongation factor 1-beta
rifcsplowo2_12_scaffold_1342_3
AR17, Woesearchaeaota, DPANN, Archaea

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1309..2367
DNA (1059bp) protein (353aa)
hypothetical protein; K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] Tax=AR17
Probable tRNA pseudouridine synthase D n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGG9_9EURY
hypothetical protein
rifcsplowo2_12_scaffold_1342_4
unknown

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comp(2360..3007)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGH1_9EURY id=5103319 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGH1_9EURY Tax=AR20
hypothetical protein
rifcsplowo2_12_scaffold_1342_5

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comp(3001..4242)
DNA (1242bp) protein (414aa)
Glycosyltransferase involved in cell wall biogenesis n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGH0_9EURY id=5103318 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Glycosyltransferase involved in cell wall biogenesis
Glycosyltransferase involved in cell wall biogenesis {ECO:0000313|EMBL:AJF62599.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_12_scaffold_1342_6
unknown

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comp(4244..5035)
DNA (792bp) protein (264aa)

This feature has no annotations

rifcsplowo2_12_scaffold_1342_7
AR20, Woesearchaeaota, DPANN, Archaea

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comp(5158..7560)
DNA (2403bp) protein (801aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000375783B
hypothetical protein
Tax=AR20
rifcsplowo2_12_scaffold_1342_8
unknown

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7747..8232
DNA (486bp) protein (162aa)

This feature has no annotations

rifcsplowo2_12_scaffold_1342_9
unknown

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8232..8504
DNA (273bp) protein (91aa)

This feature has no annotations

rifcsplowo2_12_scaffold_1342_10

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comp(8509..9063)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000368D8EA
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_S05916 {ECO:0000313|EMBL:GAG10274.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_12_scaffold_1342_11
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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9160..9486
DNA (327bp) protein (109aa)
Small primase-like proteins (Toprim domain) Tax=RBG_16_Bathyarchaeota_48_13_curated
rifcsplowo2_12_scaffold_1342_12
AR4, Woesearchaeaota, DPANN, Archaea

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9501..10766
DNA (1266bp) protein (422aa)
DNA primase id=5041910 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA primase Tax=AR4
hypothetical protein
rifcsplowo2_12_scaffold_1342_13
AR18, Woesearchaeaota, DPANN, Archaea

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comp(10780..11607)
DNA (828bp) protein (276aa)
hypothetical protein id=5051051 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein Tax=AR18
hypothetical protein
rifcsplowo2_12_scaffold_1342_14
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(11641..12882)
DNA (1242bp) protein (414aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:
CCA-adding enzyme n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WSV3_9EURY
tRNA nucleotidyltransferase CCA-adding enzyme
rifcsplowo2_12_scaffold_1342_15
unknown

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comp(12912..13448)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Entamoeba dispar (strain ATCC PRA-260 / SAW760) RepID=B0EUK2_ENTDS
rifcsplowo2_12_scaffold_1342_16

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comp(13493..14071)
DNA (579bp) protein (193aa)
Marine sediment metagenome DNA, contig: S12H4_L02343 {ECO:0000313|EMBL:GAI83156.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
segregation and condensation protein B; K06024 segregation and condensation protein B id=5044965 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Segregation and condensation protein B
rifcsplowo2_12_scaffold_1342_17
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(14179..15153)
DNA (975bp) protein (325aa)
hypothetical protein Tax=CG_Woesearch_02
Chromosome segregation and condensation protein ScpA
Segregation and condensation protein A id=5799726 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_12_scaffold_1342_18
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(15158..15787)
DNA (630bp) protein (210aa)
peptidase M50 family id=5042215 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
peptidase M50 family Tax=AR5
peptidase M50
rifcsplowo2_12_scaffold_1342_19
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(15789..19193)
DNA (3405bp) protein (1135aa)
Chromosome partition protein Smc id=5800619 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Chromosome partition protein Smc Tax=AR15
chromosome segregation protein SMC
rifcsplowo2_12_scaffold_1342_20
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(19245..20540)
DNA (1296bp) protein (432aa)
Aspartate--tRNA ligase n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZLF6_THELI
aspC; aspartyl-tRNA synthetase
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EHR79211.1}; TaxID=523849 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus litoralis (stra
rifcsplowo2_12_scaffold_1342_21
unknown

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20627..20881
DNA (255bp) protein (85aa)

This feature has no annotations

rifcsplowo2_12_scaffold_1342_22

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comp(20884..21543)
DNA (660bp) protein (220aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052};; Ta
rnhB; ribonuclease HII (EC:3.1.26.4)
RNase HII id=5800606 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_12_scaffold_1342_trna_2
unknown

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comp(21552..21657)
DNA (106bp)
transferRNA
rifcsplowo2_12_scaffold_1342_23
GWB1_OP11_38_5_partial, Woesebacteria, Microgenomates, Bacteria

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comp(21740..22105)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G2L3_ECHVK
Putative uncharacterized protein Tax=GWB1_OP11_38_5_partial
hypothetical protein
rifcsplowo2_12_scaffold_1342_24
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(22135..23124)
DNA (990bp) protein (330aa)
hypothetical protein
id=5103053 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsplowo2_12_scaffold_1342_25
unknown

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comp(23177..23545)
DNA (369bp) protein (123aa)

This feature has no annotations

rifcsplowo2_12_scaffold_1342_26
Thermodesulfobacterium commune, Thermodesulfobacterium, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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comp(23514..24293)
DNA (780bp) protein (260aa)
TrkA-N domain protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XEK5_THEPJ
potassium transporter TrkA
Potassium transporter TrkA {ECO:0000313|EMBL:AIH04026.1}; TaxID=289377 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfobacterium.;" source="
rifcsplowo2_12_scaffold_1342_27
unknown

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comp(24324..24794)
DNA (471bp) protein (157aa)

This feature has no annotations

rifcsplowo2_12_scaffold_1342_28
unknown

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comp(24794..25756)
DNA (963bp) protein (321aa)

This feature has no annotations

rifcsplowo2_12_scaffold_1342_trna_1
unknown

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comp(25856..25977)
DNA (122bp)
transferRNA
Displaying items 1-30 of 60 in total

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