ggKbase home page

cg_0.2_sub10_scaffold_616_c

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg_0.2_sub10_scaffold_616_c_1

Not on your lists

1..369
DNA (369bp) protein (123aa)
Marine sediment metagenome DNA, contig: S01H1_L02178 {ECO:0000313|EMBL:GAF71487.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
cg_0.2_sub10_scaffold_616_c_2
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(320..622)
DNA (303bp) protein (101aa)
Tax=CG_Pacearch_06
cg_0.2_sub10_scaffold_616_c_3
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(778..1392)
DNA (615bp) protein (205aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=CG_Pacearch_06
Base excision DNA repair protein, HhH-GPD family n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IE81_ACIB4 id=5103570 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Base excision DNA repair protein, HhH-GPD family
cg_0.2_sub10_scaffold_616_c_4
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


1442..3769
DNA (2328bp) protein (776aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=CG_Pacearch_06
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5044963 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Valine-tRNA ligase
cg_0.2_sub10_scaffold_616_c_5
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

3849..4943
DNA (1095bp) protein (365aa)
peptide chain release factor 1 Tax=CG_Pacearch_06
peptide chain release factor subunit 1; K03265 peptide chain release factor subunit 1 id=5045856 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
peptide chain release factor 1
cg_0.2_sub10_scaffold_616_c_6
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

5084..7090
DNA (2007bp) protein (669aa)
MCM family protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] Tax=CG_Pacearch_06
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037CD2F5
DNA replication initiator Cdc21/Cdc54
cg_0.2_sub10_scaffold_616_c_7
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

7087..7344
DNA (258bp) protein (86aa)
Tax=CG_Pacearch_06
cg_0.2_sub10_scaffold_616_c_8
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

7379..7993
DNA (615bp) protein (205aa)
Uncharacterized protein conserved in archaea n=2 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QHY8_9EURY id=5103225 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
replication factor A complex, RPA32 subunit; K09746 hypothetical protein Tax=CG_Pacearch_06
hypothetical protein
cg_0.2_sub10_scaffold_616_c_9
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(7985..8626)
DNA (642bp) protein (214aa)
Methyltransferase family protein n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5AWS7_EUBCE
SAM-dependent methyltransferase Tax=CG_Pacearch_06
SAM-dependent methyltransferase
cg_0.2_sub10_scaffold_616_c_10
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(8673..9239)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B00D1
hypothetical protein Tax=CG_Pacearch_06
cg_0.2_sub10_scaffold_616_c_11
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

9290..9697
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003671EC4
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 Tax=CG_Pacearch_06
Translation initiation factor 2 subunit beta
cg_0.2_sub10_scaffold_616_c_12
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

9775..9924
DNA (150bp) protein (50aa)
hypothetical protein Tax=CG_Pacearch_06
seg 8..16 id=97308 bin=ACD64 species=ACD64 genus=ACD64 taxon_order=ACD64 taxon_class=ACD64 phylum=TM6 tax=ACD64 organism_group=TM6 organism_desc=unknown
hypothetical protein
cg_0.2_sub10_scaffold_616_c_13
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

9945..10244
DNA (300bp) protein (100aa)
Marine sediment metagenome DNA, contig: S12H4_C00806 Tax=CG_Pacearch_06
cg_0.2_sub10_scaffold_616_c_14
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

10282..10635
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363D148
translation initiation factor eIF-1A; K03236 translation initiation factor 1A Tax=CG_Pacearch_06
Translation initiation factor 1A
cg_0.2_sub10_scaffold_616_c_15
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists


10637..11119
DNA (483bp) protein (161aa)
RNA-processing protein; K06961 ribosomal RNA assembly protein Tax=CG_Pacearch_06
KH domain protein id=5799968 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
universal archaeal KH domain protein
cg_0.2_sub10_scaffold_616_c_16
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11165..11302)
DNA (138bp) protein (46aa)
Histone H1-like protein HC2 {ECO:0000313|EMBL:BAQ18060.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepi
cg_0.2_sub10_scaffold_616_c_trna_1
unknown

Not on your lists

11631..11703
DNA (73bp)
transferRNA
cg_0.2_sub10_scaffold_616_c_17
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

11712..12224
DNA (513bp) protein (171aa)
Tax=CG_Pacearch_06
cg_0.2_sub10_scaffold_616_c_18
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

12261..13352
DNA (1092bp) protein (364aa)
mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=CG_Pacearch_06
hypothetical protein id=5801911 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
cg_0.2_sub10_scaffold_616_c_19
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

13387..13947
DNA (561bp) protein (187aa)
Nitroreductase n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BES1_9EURY rbh
Nitroreductase Tax=CG_Pacearch_06
Nitroreductase
cg_0.2_sub10_scaffold_616_c_20
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

13952..14269
DNA (318bp) protein (106aa)
Cupin family protein n=1 Tax=Sulfurimonas gotlandica GD1 RepID=B6BI29_9HELI
cupin family protein; K11312 cupin 2 domain-containing protein Tax=CG_Pacearch_06
Lipid A 3-O-deacylase
cg_0.2_sub10_scaffold_616_c_21
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(14304..15383)
DNA (1080bp) protein (360aa)
Cell division protein FtsZ n=2 Tax=Candidatus Parvarchaeum RepID=D6GVI7_9EURY id=5103883 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
cell division protein FtsZ; K03531 cell division protein FtsZ Tax=CG_Pacearch_06
Cell division protein FtsZ
cg_0.2_sub10_scaffold_616_c_22
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

15503..15889
DNA (387bp) protein (129aa)
RNA polymerase sigma factor n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SL36_PLABD
RNA polymerase, sigma subunit, SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=CG_Pacearch_06
RNA polymerase, sigma subunit, SigW
cg_0.2_sub10_scaffold_616_c_23
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(16107..17081)
DNA (975bp) protein (325aa)
probable deoxyhypusine synthase-like; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=CG_Pacearch_06
deoxyhypusine synthase, putative (EC:2.5.1.46); K00809 deoxyhypusine synthase [EC:2.5.1.46] id=5048269 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
deoxyhypusine synthase (EC:2.5.1.46)
cg_0.2_sub10_scaffold_616_c_24

Not on your lists

comp(17116..17439)
DNA (324bp) protein (108aa)
Marine sediment metagenome DNA, contig: S01H1_L02178 {ECO:0000313|EMBL:GAF71487.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Displaying 25 items

View Taxonomy