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CG08_land_8_20_14_0.20_scaffold_1560_c

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG08_land_8_20_14_0.20_scaffold_1560_c_1

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39..404
DNA (366bp) protein (122aa)
add45; ribosomal protein L7Ae/L30e/S12e/Glarge subunit ribosomal protein L7Ae
ribosomal protein L7Ae/L30e/S12e/Gadd45; K02936 large subunit ribosomal protein L7Ae bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L7Ae {ECO:0000256|HAMAP-Rule:MF_00326}; Ribosomal protein L8e {ECO:0000256|HAMAP-Rule:MF_00326}; species="Archaea.;" source="archaeon GW2011_AR10.;"
CG08_land_8_20_14_0.20_scaffold_1560_c_2
AR10, Diapherotrites, DPANN, Archaea

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423..641
DNA (219bp) protein (73aa)
30S ribosomal protein S28, small subunit ribosomal protein S28e
rps28e; 30S ribosomal protein S28; K02979 small subunit ribosomal protein S28e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
CG08_land_8_20_14_0.20_scaffold_1560_c_3

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646..867
DNA (222bp) protein (74aa)
50S ribosomal protein L24e Tax=uncultured archaeon RepID=D1J9I3_9ARCH
50S ribosomal protein L24e {ECO:0000256|HAMAP-Rule:MF_00773}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribosomal protein L24e Rpl24e
CG08_land_8_20_14_0.20_scaffold_1560_c_4
AR10, Diapherotrites, DPANN, Archaea

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887..2629
DNA (1743bp) protein (581aa)
translation initiation factor IF-2, translation initiation factor 5B
InfB_2; translation initiation factor IF-2; K03243 translation initiation factor 5B bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
CG08_land_8_20_14_0.20_scaffold_1560_c_5

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2684..3067
DNA (384bp) protein (128aa)
30S ribosomal protein S6e Tax=Methanotorris formicicus Mc-S-70 RepID=H1KWN6_9EURY
30S ribosomal protein S6e {ECO:0000256|HAMAP-Rule:MF_00512, ECO:0000256|SAAS:SAAS00018829}; species="Archaea.;" source="archaeon GW2011_AR21.;"
30S ribosomal protein S6
CG08_land_8_20_14_0.20_scaffold_1560_c_6

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3258..4457
DNA (1200bp) protein (400aa)
Translation initiation factor 2 subunit gamma Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BF40_METIK
Translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:KHO55203.1}; species="Archaea.;" source="archaeon GW2011_AR21.;"
translation initiation factor 2 subunit gamma
CG08_land_8_20_14_0.20_scaffold_1560_c_7
unknown

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4417..4833
DNA (417bp) protein (139aa)

This feature has no annotations

CG08_land_8_20_14_0.20_scaffold_1560_c_8
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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4817..5527
DNA (711bp) protein (237aa)
DNA-directed RNA polymerase (EC:2.7.7.6)
DNA-directed RNA polymerase {ECO:0000313|EMBL:AEG18771.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AEG18771.1};; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
DNA-directed RNA polymerase Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3W9_METSW
CG08_land_8_20_14_0.20_scaffold_1560_c_9
AR10, Diapherotrites, DPANN, Archaea

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5536..5736
DNA (201bp) protein (67aa)
transcription elongation factor Spt4/RpoE2, zinc finger protein, DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
Spt4; transcription elongation factor Spt4/RpoE2, zinc finger protein; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
CG08_land_8_20_14_0.20_scaffold_1560_c_10

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5844..6230
DNA (387bp) protein (129aa)
rps24e; 30S ribosomal protein S24E; K02974 small subunit ribosomal protein S24e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545}; species="Archaea.;" source="archaeon GW2011_AR3.;"
rps24e; 30S ribosomal protein S24
CG08_land_8_20_14_0.20_scaffold_1560_c_11
Methanococcus vannielii, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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6241..6444
DNA (204bp) protein (68aa)
30S ribosomal protein S27ae Tax=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) RepID=RS27A_METVS
30S ribosomal protein S27ae
30S ribosomal protein S27ae {ECO:0000255|HAMAP-Rule:MF_00777}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224).;"
CG08_land_8_20_14_0.20_scaffold_1560_c_12
BJP_IG2069_Methanobacteriales_33_27, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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6574..6966
DNA (393bp) protein (131aa)
Putative uncharacterized protein Ta0623 Tax=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) RepID=Q9HKH6_THEAC
hypothetical protein
Tax=BJP_IG2069_Methanobacteriales_33_27
CG08_land_8_20_14_0.20_scaffold_1560_c_13

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7115..8851
DNA (1737bp) protein (579aa)
Transporter, CPA2 family Tax=Methanococcus maripaludis RepID=A4FZ11_METM5 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Sodium/hydrogen exchanger {ECO:0000313|EMBL:KHO54917.1}; species="Archaea.;" source="archaeon GW2011_AR21.;"
Transporter, CPA2 family
CG08_land_8_20_14_0.20_scaffold_1560_c_14
nanoarchaeote Nst1, Nanoarchaeota, Archaea

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8915..9775
DNA (861bp) protein (287aa)
rRNA biogenesis protein Nop56/Nop58 Tax=nanoarchaeote Nst1 RepID=R1E4T9_9ARCH
rRNA biogenesis protein Nop56/Nop58 {ECO:0000313|EMBL:EOD42688.1}; species="Archaea; Nanoarchaeota.;" source="nanoarchaeote Nst1.;"
pre-mRNA splicing ribonucleoprotein PRP31
CG08_land_8_20_14_0.20_scaffold_1560_c_15
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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9780..11123
DNA (1344bp) protein (448aa)
ATP-dependent DNA helicase bin=GWB2_Nitrospirae_rel_47_37 species=Methanosarcina mazei genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
putative transcriptional regulator
Tax=GWB2_Nitrospirae_47_37_curated
CG08_land_8_20_14_0.20_scaffold_1560_c_16
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11129..11998
DNA (870bp) protein (290aa)
Beta-lactamase superfamily domain protein Tax=Clostridium bifermentans ATCC 638 RepID=T4VFU4_CLOBI
Beta-lactamase superfamily domain protein {ECO:0000313|EMBL:EQK42594.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
hypothetical protein
CG08_land_8_20_14_0.20_scaffold_1560_c_17
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

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12004..12639
DNA (636bp) protein (212aa)
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00351}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00351};; species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum boonei (strain DSM 19572 / T469).;"
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase Tax=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) RepID=FLPA_PICTO
fibrillarin
CG08_land_8_20_14_0.20_scaffold_1560_c_18
unknown

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12640..13131
DNA (492bp) protein (164aa)

This feature has no annotations

CG08_land_8_20_14_0.20_scaffold_1560_c_19
unknown

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13177..14310
DNA (1134bp) protein (378aa)

This feature has no annotations

CG08_land_8_20_14_0.20_scaffold_1560_c_20
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14324..14611
DNA (288bp) protein (96aa)
Integral membrane protein Tax=Ruminococcus sp. CAG:254 RepID=R5V2A3_9FIRM
Integral membrane protein {ECO:0000313|EMBL:CCZ84445.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
hypothetical protein
CG08_land_8_20_14_0.20_scaffold_1560_c_21
unknown

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14799..15056
DNA (258bp) protein (86aa)

This feature has no annotations

CG08_land_8_20_14_0.20_scaffold_1560_c_trna_1
unknown

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15138..15209
DNA (72bp)
transferRNA His
CG08_land_8_20_14_0.20_scaffold_1560_c_22
CG_Micra_04, Micraarchaeota, Archaea

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15322..15567
DNA (246bp) protein (82aa)
hypothetical protein
id=5241114 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=CG_Micra_04
CG08_land_8_20_14_0.20_scaffold_1560_c_23
GWE2_CPR3_35_7, CPR3, Bacteria

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comp(15622..16155)
DNA (534bp) protein (178aa)
Putative uncharacterized protein bin=GWF2_CPR3_35_18 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWF2_CPR3_35_18 organism_group=CPR3
Uncharacterized protein {ECO:0000313|EMBL:KKP86274.1}; species="Bacteria; candidate division CPR3.;" source="candidate division CPR3 bacterium GW2011_GWE2_35_7.;"
hypothetical protein
CG08_land_8_20_14_0.20_scaffold_1560_c_24
unknown

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comp(16264..16413)
DNA (150bp) protein (50aa)

This feature has no annotations

CG08_land_8_20_14_0.20_scaffold_1560_c_25
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(16418..17275)
DNA (858bp) protein (286aa)
hypothetical protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
CG08_land_8_20_14_0.20_scaffold_1560_c_26
AR10, Diapherotrites, DPANN, Archaea

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comp(17275..18294)
DNA (1020bp) protein (340aa)
hypothetical protein
hypothetical protein; K06915 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
Displaying 27 items

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