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GD18-4_B1_scaffold_557599

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_557599_1
CG_Pacearch_04, Pacearchaeota, Archaea

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3..2474
DNA (2472bp) protein (824aa)
Isoleucine--tRNA ligase id=5800603 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
isoleucyl-tRNA synthetase
Tax=CG_Pacearch_04
GD18-4_B1_scaffold_557599_2

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2525..3313
DNA (789bp) protein (263aa)
Marine sediment metagenome DNA, contig: S03H2_S22255 {ECO:0000313|EMBL:GAH87286.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
transmembrane_regions id=5241753 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
GD18-4_B1_scaffold_557599_3

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3376..3921
DNA (546bp) protein (182aa)
2-alkenal reductase; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5048857 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA-box factor {ECO:0000256|HAMAP-Rule:MF_00408}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
TATA-box-binding protein
GD18-4_B1_scaffold_557599_4
Ferroglobus placidus, Ferroglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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3993..6935
DNA (2943bp) protein (981aa)
Transcriptional regulator, XRE family n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXD1_FERPA
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ADC65144.1}; TaxID=589924 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Ferroglobus.;" source="Ferroglobus placidus (strain DSM 10642 / AEDII12DO).;"
GD18-4_B1_scaffold_557599_5

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6950..7315
DNA (366bp) protein (122aa)
MCM family protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5048855 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO53924.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO53924.1};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
DNA replication initiator Cdc21/Cdc54
GD18-4_B1_scaffold_557599_6
AR18, Woesearchaeaota, DPANN, Archaea

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7402..8091
DNA (690bp) protein (230aa)
id=5048854 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Tax=AR18
GD18-4_B1_scaffold_557599_7
unknown

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8135..8569
DNA (435bp) protein (145aa)

This feature has no annotations

GD18-4_B1_scaffold_557599_8
AR20, Woesearchaeaota, DPANN, Archaea

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8605..9012
DNA (408bp) protein (136aa)
Translation initiation factor 2 subunit beta n=2 Tax=Methanothermobacter RepID=IF2B_METTH id=5103227 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Translation initiation factor 2 subunit beta
Tax=AR20
GD18-4_B1_scaffold_557599_9

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9009..9299
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MLS2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHO54885.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
hypothetical protein
GD18-4_B1_scaffold_557599_10

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9277..9666
DNA (390bp) protein (130aa)
NMD3-related protein (nonsense mediated mRNA decay); K07562 nonsense-mediated mRNA decay protein 3 id=5043728 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Nonsense-mediated mRNA decay protein 3 {ECO:0000313|EMBL:KHO47044.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
GD18-4_B1_scaffold_557599_11
CG_Woesearch_01, Woesearchaeota, Archaea

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9684..10061
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363D148
Translation initiation factor 1A
Tax=CG_Woesearch_01
GD18-4_B1_scaffold_557599_12
Methanotorris formicicus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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10115..10627
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003723D19
KH domain protein {ECO:0000313|EMBL:EHP85885.1}; TaxID=647171 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris formicicus Mc-S-70.;"
KH domain-containing protein
GD18-4_B1_scaffold_557599_13

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10663..12306
DNA (1644bp) protein (548aa)
Type 2 DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00322};; Type II DNA topoisomerase VI subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
DNA topoisomerase VI, subunit B n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEY4_9BACT id=5103233 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase VI, subunit B
GD18-4_B1_scaffold_557599_14

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12327..13412
DNA (1086bp) protein (362aa)
Type 2 DNA topoisomerase 6 subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00132};; Type II DNA topoisomerase VI subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Candidatus Parvarchaeum RepID=D2EGK9_9EURY id=5103234 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase ATP-hydrolyzing
GD18-4_B1_scaffold_557599_15
unknown

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13501..13770
DNA (270bp) protein (90aa)

This feature has no annotations

GD18-4_B1_scaffold_557599_16
CG_Woesearch_02, Woesearchaeota, Archaea

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13914..14906
DNA (993bp) protein (331aa)
Phospholipase D/Transphosphatidylase id=5799976 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
phospholipase D/transphosphatidylase
Tax=CG_Woesearch_02
GD18-4_B1_scaffold_557599_17
GWA1_OD1_36_12, Parcubacteria, Bacteria

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15272..16078
DNA (807bp) protein (269aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KKP93133.1}; TaxID=1618782 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein id=5802131 bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
ABC transporter, ATP-binding protein
GD18-4_B1_scaffold_557599_18
CG_Pacearch_06, Pacearchaeota, Archaea

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16075..16821
DNA (747bp) protein (249aa)
multidrug ABC transporter permease; K09686 antibiotic transport system permease protein id=5802130 bin=PER_GWA2_38_35 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
multidrug ABC transporter, permease protein
Tax=CG_Pacearch_06
GD18-4_B1_scaffold_557599_19
OP11_GWA2_32_13, Roizmanbacteria, Microgenomates, Bacteria

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comp(17200..17367)
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36195.1}; TaxID=1618475 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_32_13.;"
GD18-4_B1_scaffold_557599_20
unknown

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comp(17501..17821)
DNA (321bp) protein (107aa)

This feature has no annotations

GD18-4_B1_scaffold_557599_21
unknown

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comp(17823..18092)
DNA (270bp) protein (90aa)

This feature has no annotations

GD18-4_B1_scaffold_557599_22
unknown

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18421..18531
DNA (111bp) protein (37aa)

This feature has no annotations

GD18-4_B1_scaffold_557599_23
AR20, Woesearchaeaota, DPANN, Archaea

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comp(18582..19139)
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1YZ68_9EURY id=5103413 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=AR20
GD18-4_B1_scaffold_557599_24
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(19090..19662)
DNA (573bp) protein (191aa)
hypothetical protein
id=5103412 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=RBG_13_Pacearchaeota_36_9_curated
Displaying 24 items

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