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B_1_S1_Biohub_coassembly_k141_3791743

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_3791743_1
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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331..1077
DNA (747bp) protein (249aa)
Multiple antibiotic resistance (MarC)-related protein Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7DBW4_STAHD
multiple antibiotic resistance (MarC)-like protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_2
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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1197..3290
DNA (2094bp) protein (698aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E589_9ARCH
putative anaerobic ribonucleoside-triphosphate reductase
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_3
AR11, Woesearchaeaota, DPANN, Archaea

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3610..6246
DNA (2637bp) protein (879aa)
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1)
Tax=AR11
B_1_S1_Biohub_coassembly_k141_3791743_4
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(6318..7247)
DNA (930bp) protein (310aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILA8_NITGG
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_5
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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7367..7822
DNA (456bp) protein (152aa)
aspartate carbamoyltransferase, regulatory subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain Tax=Cenarchaeum symbiosum (strain A) RepID=PYRI_CENSY
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_6
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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7876..8118
DNA (243bp) protein (81aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_7
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(8227..8586)
DNA (360bp) protein (120aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_8
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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8790..9188
DNA (399bp) protein (133aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_9
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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comp(9242..11326)
DNA (2085bp) protein (695aa)
V-type H+-transporting ATPase subunit I (EC:3.6.3.14)
V-type H+-transporting ATPase subunit I {ECO:0000313|EMBL:BAJ48901.1}; EC=3.6.3.14 {ECO:0000313|EMBL:BAJ48901.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum subterraneum.;"
V-type H+-transporting ATPase subunit I Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N9D2_9ARCH
B_1_S1_Biohub_coassembly_k141_3791743_10

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comp(11446..11973)
DNA (528bp) protein (176aa)
Putative uncharacterized protein Tax=uncultured archaeon GZfos9D1 RepID=Q647W8_9ARCH bin=RBG2 species=uncultured archaeon GZfos9D1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG2 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S06H3_C00480 {ECO:0000313|EMBL:GAH98963.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3791743_11
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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12084..12383
DNA (300bp) protein (100aa)
archaeal/vacuolar-type H+-ATPase subunit F (EC:4.2.1.20)
Archaeal A1A0-type ATP synthase, subunit F Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFJ1_NITGG
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_12
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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12444..13058
DNA (615bp) protein (205aa)
atpE; archaeal A1A0-type ATP synthase, subunit E (EC:3.6.3.14)
V-type proton ATPase subunit E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJB0_NITGG
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13042..14880
DNA (1839bp) protein (613aa)
atpA; archaeal A1A0-type ATP synthase, subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
V-type ATP synthase alpha chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG1_NITGG
B_1_S1_Biohub_coassembly_k141_3791743_14
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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14870..16261
DNA (1392bp) protein (464aa)
atpB; archaeal A1A0-type ATP synthase, subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM91_NITGG
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_15
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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16484..16951
DNA (468bp) protein (156aa)
atpD; archaeal A1A0-type ATP synthase, subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL19_NITGG
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum subterraneum.;"
B_1_S1_Biohub_coassembly_k141_3791743_16
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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16948..17115
DNA (168bp) protein (56aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_17
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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17117..17428
DNA (312bp) protein (104aa)
atpK; archaeal A1A0-type ATP synthase, subunit K (EC:3.6.3.14)
F-type H+-transporting ATPase subunit gamma Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N2P9_9ARCH
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_18
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

17594..18214
DNA (621bp) protein (207aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_19
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(18608..18793)
DNA (186bp) protein (62aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_20
unknown

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19103..19552
DNA (450bp) protein (150aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3791743_21
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(20187..21206)
DNA (1020bp) protein (340aa)
atpC; archaeal A1A0-type ATP synthase, subunit C (EC:3.6.3.14)
Archaeal A1A0-type ATP synthase, subunit C Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG7_NITGG
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_22
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(21250..21585)
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM0_NITGG
hypothetical protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_23
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(21639..21974)
DNA (336bp) protein (112aa)
Nascent polypeptide-associated complex protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CYS6_9ARCH
Nascent polypeptide associated complex NAC
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_24
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(22070..22570)
DNA (501bp) protein (167aa)
PUA domain containing protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A621_NITMS
PUA domain-containing protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_25
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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22621..23061
DNA (441bp) protein (147aa)
XRE family transcriptional regulator Tax=Methanobacterium formicicum DSM 3637 RepID=K2RA04_METFO
XRE family transcriptional regulator
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_26
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

23154..24371
DNA (1218bp) protein (406aa)
GTPase HflX Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM2_NITGG
GTP-binding protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_27
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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24364..24897
DNA (534bp) protein (178aa)
tRNA (cytidine(56)-2'-O)-methyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG8_NITGG
hypothetical protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_28
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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24894..25430
DNA (537bp) protein (179aa)
Transcription factor E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDR9_NITGG
tfe; transcription factor E
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_29
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(25647..26174)
DNA (528bp) protein (176aa)
dusP; dual specificity protein phosphatase (EC:3.1.3.16)
Dual specificity protein phosphatase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHX9_NITGG
Tax=RBG_16_Thaumarchaeota_49_8_curated
B_1_S1_Biohub_coassembly_k141_3791743_30
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(26210..27568)
DNA (1359bp) protein (453aa)
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS {ECO:0000256|HAMAP-Rule:MF_01892}; Short=tRNA(Ile2)-agm2C synthetase {ECO:0000256|HAMAP-Rule:MF_01892};; EC=6.3.4.22 {ECO:0000256|HAMAP-Rule:MF_01892};; tRNA(Ile2) agmatidine synthetase {ECO:0000256|HAMAP-Rule:MF_01892}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CYN5_9ARCH
putative DNA-binding protein containing a Zn-ribbon domain
Displaying items 1-30 of 35 in total

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