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S_p1_S3_coassembly_k141_2094432

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_2094432_1
AR15, Woesearchaeaota, DPANN, Archaea

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1..216
DNA (216bp) protein (72aa)
seg bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR15
S_p1_S3_coassembly_k141_2094432_2
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

290..988
DNA (699bp) protein (233aa)
nucleotidyltransferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
mannose-1-phosphate guanylyltransferase (EC:2.7.7.13)
Tax=AR11
S_p1_S3_coassembly_k141_2094432_3
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

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1148..2422
DNA (1275bp) protein (425aa)
Tax=RBG_16_OP11_Levybacteria_35_11_curated
S_p1_S3_coassembly_k141_2094432_4
unknown

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2492..3010
DNA (519bp) protein (173aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2094432_5
unknown

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3067..3483
DNA (417bp) protein (139aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2094432_6
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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3544..4869
DNA (1326bp) protein (442aa)
Phosphomannomutase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0V7_THERP
glmM; phosphomannomutase
Phosphomannomutase {ECO:0000313|EMBL:ACM05655.1}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
S_p1_S3_coassembly_k141_2094432_7
unknown

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4937..5323
DNA (387bp) protein (129aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2094432_8
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(5349..5966)
DNA (618bp) protein (206aa)
Putative uncharacterized protein bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
hypothetical protein
Tax=CG_Pacearch_05
S_p1_S3_coassembly_k141_2094432_trna_1
unknown

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comp(6020..6093)
DNA (74bp)
transferRNA Arg
S_p1_S3_coassembly_k141_2094432_9
CG_Woesearch_02, Woesearchaeota, Archaea

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6211..6552
DNA (342bp) protein (114aa)
ribonuclease P protein component 2; K03537 ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_2094432_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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6601..7305
DNA (705bp) protein (235aa)
Proteasome subunit alpha bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Proteasome subunit alpha
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_2094432_11

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7328..8047
DNA (720bp) protein (240aa)
RNA-associated protein; K14574 ribosome maturation protein SDO1 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosome maturation protein SDO1 {ECO:0000313|EMBL:KHO45874.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
putative RNA-associated protein
S_p1_S3_coassembly_k141_2094432_12

Not on your lists

8048..8836
DNA (789bp) protein (263aa)
rpr43; exosome RNA binding protein (EC:3.1.13.-); K03679 exosome complex component RRP4 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; species="Archaea.;" source="archaeon GW2011_AR3.;"
putative exosome complex RNA-binding protein 1
S_p1_S3_coassembly_k141_2094432_13

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8833..9519
DNA (687bp) protein (229aa)
Rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Exosome complex exonuclease Rrp41, exosome complex component RRP41 {ECO:0000313|EMBL:KHO45872.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
exosome complex exonuclease Rrp41
S_p1_S3_coassembly_k141_2094432_14

Not on your lists

9516..10292
DNA (777bp) protein (259aa)
RNase PH-related exoribonuclease {ECO:0000313|EMBL:KHO52984.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal RNA-processing protein RRP42
S_p1_S3_coassembly_k141_2094432_15
CG_Woesearch_02, Woesearchaeota, Archaea

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10294..10515
DNA (222bp) protein (74aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000360FC43
hypothetical protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_2094432_16

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10493..10792
DNA (300bp) protein (100aa)
hypothetical protein; K09728 hypothetical protein bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54393.1}; species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
S_p1_S3_coassembly_k141_2094432_17
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10789..12072)
DNA (1284bp) protein (428aa)
Processing protease bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
peptidase M16 domain-containing protein
Tax=AR15
S_p1_S3_coassembly_k141_2094432_18
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(12182..12568)
DNA (387bp) protein (129aa)
Tax=CG_Pacearch_05
S_p1_S3_coassembly_k141_2094432_19
unknown

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comp(12549..12749)
DNA (201bp) protein (67aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2094432_20
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

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comp(12790..13767)
DNA (978bp) protein (326aa)
Putative tRNA pseudouridine synthase B {ECO:0000313|EMBL:KKU47144.1}; Flags: Fragment;; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
Probable tRNA pseudouridine synthase B bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
H/ACA RNA-protein complex component Cbf5p
S_p1_S3_coassembly_k141_2094432_21
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(13886..14359)
DNA (474bp) protein (158aa)
RPL31A; 50S ribosomal protein L31; K02910 large subunit ribosomal protein L31e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal protein L31e
Tax=CG_Woesearch_01
S_p1_S3_coassembly_k141_2094432_22

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comp(14546..14854)
DNA (309bp) protein (103aa)
DNA-binding protein; K06875 programmed cell death protein 5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Programmed cell death protein 5 {ECO:0000313|EMBL:KHO45171.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S_p1_S3_coassembly_k141_2094432_23

Not on your lists


comp(14857..15297)
DNA (441bp) protein (147aa)
30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S19; K02966 small subunit ribosomal protein S19e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ribosomal protein S19e
S_p1_S3_coassembly_k141_2094432_24
unknown

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comp(15529..15690)
DNA (162bp) protein (54aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2094432_25
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15736..15984)
DNA (249bp) protein (83aa)
Cro/Cl family transcriptional regulator Tax=Paenibacillus sp. HW567 RepID=UPI0003652371
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CQR55207.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
S_p1_S3_coassembly_k141_2094432_26
unknown

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comp(16119..17258)
DNA (1140bp) protein (380aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2094432_27

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comp(17325..20174)
DNA (2850bp) protein (950aa)
ATP-dependent helicase Lhr and Lhr-like protein helicase {ECO:0000313|EMBL:KHO45167.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO45167.1};; species="Archaea.;" source="archaeon GW2011_AR3.;"
ATP dependent helicase, lhr family; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DEAD/H associated protein
S_p1_S3_coassembly_k141_2094432_28
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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20299..20865
DNA (567bp) protein (189aa)
Putative membrane protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXM2_METHD
Putative membrane protein {ECO:0000313|EMBL:AGB48803.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
hypothetical protein
S_p1_S3_coassembly_k141_2094432_29
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(20910..21299)
DNA (390bp) protein (130aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000377A31C
hypothetical protein
Tax=AR15
Displaying items 1-30 of 32 in total

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