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S_p1_S3_coassembly_k141_108045

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_108045_1
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(776..1792)
DNA (1017bp) protein (339aa)
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] bin=GWC2_NOV_55_46 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_NOV_55_46 organism_group=Proteobacteria
gmd; GDP-mannose 4,6-dehydratase
Tax=GWC2_Deltaproteobacteria_55_46b_curated
S_p1_S3_coassembly_k141_108045_2
GWF2_OP11_38_9, Pacebacteria, Microgenomates, Bacteria

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1876..2586
DNA (711bp) protein (237aa)
glycosyltransferase (EC:2.4.1.-)
Glycosyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DMA9_9PROT bin=OP11_3 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
Glycosyltransferase {ECO:0000313|EMBL:KKQ88815.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Pacebacteria) bacterium GW2011_GWF2_38_9.;"
S_p1_S3_coassembly_k141_108045_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2573..3628)
DNA (1056bp) protein (352aa)
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:KCZ70525.1}; EC=5.1.3.10 {ECO:0000313|EMBL:KCZ70525.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CDP-tyvelose epimerase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YJA4_THEYD
CDP-tyvelose epimerase
S_p1_S3_coassembly_k141_108045_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3631..4698)
DNA (1068bp) protein (356aa)
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:KCZ70526.1}; EC=5.1.3.10 {ECO:0000313|EMBL:KCZ70526.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
sli:Slin_2975 NAD-dependent epimerase/dehydratase bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
NAD-dependent epimerase/dehydratase
S_p1_S3_coassembly_k141_108045_5
CG_Micra_01, Micraarchaeota, Archaea

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comp(4721..5482)
DNA (762bp) protein (254aa)
translation initiation factor eIF2B subunit; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
mannose-1-phosphate guanylyltransferase
Tax=CG_Micra_01
S_p1_S3_coassembly_k141_108045_6
RBG_16_OP11_Levybacteria_35_6_curated, Levybacteria, Microgenomates, Bacteria

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comp(5489..6484)
DNA (996bp) protein (332aa)
galE3; UDP-glucose 4-epimerase (EC:5.1.3.2)
NAD-dependent epimerase/dehydratase bin=GWC2_Planctomycete_KSU_39_26 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
Tax=RBG_16_OP11_Levybacteria_35_6_curated
S_p1_S3_coassembly_k141_108045_7

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comp(6549..7475)
DNA (927bp) protein (309aa)
UDP-glucose dehydrogenase (EC:1.1.1.22)
UDP-glucose-6-dehydrogenase Tax=Thermococcus sp. AM4 RepID=B7R2A2_9EURY
Marine sediment metagenome DNA, contig: S06H3_C04049 {ECO:0000313|EMBL:GAI14910.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S_p1_S3_coassembly_k141_108045_8
Candidatus Parvarchaeum acidiphilum, Candidatus Parvarchaeum, Parvarchaeota, Archaea

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7557..8396
DNA (840bp) protein (280aa)
Nucleotidyl transferase Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEU4_9EURY
Nucleotidyl transferase {ECO:0000313|EMBL:EEZ93155.1}; species="Archaea; Parvarchaeota; Candidatus Parvarchaeum.;" source="Candidatus Parvarchaeum acidiphilum ARMAN-4.;"
nucleotidyl transferase
S_p1_S3_coassembly_k141_108045_9
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(8393..9367)
DNA (975bp) protein (325aa)
Geranylgeranyl reductase Tax=Halosarcina pallida JCM 14848 RepID=M0D5X5_9EURY
Geranylgeranyl reductase {ECO:0000313|EMBL:ELZ30077.1}; species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 14848.;"
bchP; geranylgeranyl hydrogenase
S_p1_S3_coassembly_k141_108045_10
CG_Woesearch_02, Woesearchaeota, Archaea

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9517..10374
DNA (858bp) protein (286aa)
Protein translocase subunit SecF bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
SecD/SecF/SecDF export membrane protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_108045_11
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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10371..12050
DNA (1680bp) protein (560aa)
SecD/SecF/SecDF export membrane protein; K03072 preprotein translocase subunit SecD bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
secD; protein export membrane protein SecD
Tax=RBG_16_Micrarchaeota_36_9_curated
S_p1_S3_coassembly_k141_108045_trna_1
unknown

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comp(12103..12187)
DNA (85bp)
transferRNA Leu
Displaying 12 items

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