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S_p1_S3_coassembly_k141_283723

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_283723_1

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comp(2..562)
DNA (561bp) protein (187aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA-box factor {ECO:0000256|HAMAP-Rule:MF_00408}; species="Archaea.;" source="archaeon GW2011_AR3.;"
TATA-box-binding protein
S_p1_S3_coassembly_k141_283723_2

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comp(1010..1771)
DNA (762bp) protein (254aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51237.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
S_p1_S3_coassembly_k141_283723_3
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(1795..3186)
DNA (1392bp) protein (464aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecY
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_283723_4

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comp(3183..3620)
DNA (438bp) protein (146aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
S_p1_S3_coassembly_k141_283723_5

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comp(3607..3957)
DNA (351bp) protein (117aa)
Large subunit ribosomal protein L30 {ECO:0000313|EMBL:KHO51167.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
50S ribosomal protein L30P, archaeal bin=Nanosalinarum tax=Nanosalinarum
LSU ribosomal protein L30P
S_p1_S3_coassembly_k141_283723_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3954..4760)
DNA (807bp) protein (269aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_283723_7
Methanothermococcus okinawensis, Methanothermococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(4753..5343)
DNA (591bp) protein (197aa)
50S ribosomal protein L18P Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AM76_METOI
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus.;" source="Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1).;"
S_p1_S3_coassembly_k141_283723_8

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comp(5348..5797)
DNA (450bp) protein (150aa)
50S ribosomal protein L19 Tax=Methanothermococcus thermolithotrophicus RepID=UPI00036744AF
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; species="Archaea.;" source="archaeon GW2011_AR16.;"
ribosomal protein L19e
S_p1_S3_coassembly_k141_283723_9

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comp(5804..6415)
DNA (612bp) protein (204aa)
50S ribosomal protein L32; K02912 large subunit ribosomal protein L32e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO46816.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L32e
S_p1_S3_coassembly_k141_283723_10

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comp(6412..6948)
DNA (537bp) protein (179aa)
50S ribosomal protein L6 Tax=Thermococcus RepID=RL6_PYRKO bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Large subunit ribosomal protein L6 {ECO:0000313|EMBL:AJS12908.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
S_p1_S3_coassembly_k141_283723_11

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comp(6967..7356)
DNA (390bp) protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
S_p1_S3_coassembly_k141_283723_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(7370..7600)
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_283723_13

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comp(7597..8112)
DNA (516bp) protein (172aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
S_p1_S3_coassembly_k141_283723_14
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(8109..8786)
DNA (678bp) protein (226aa)
30S ribosomal protein S4e Tax=Methanobrevibacter RepID=RS4E_METS3
30S ribosomal protein S4e
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
S_p1_S3_coassembly_k141_283723_15
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(8783..9187)
DNA (405bp) protein (135aa)
50S ribosomal protein L24P Tax=Thermococcus onnurineus (strain NA1) RepID=B6YSM5_THEON bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L24P
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_283723_16

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comp(9184..9585)
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14P bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L14P
S_p1_S3_coassembly_k141_283723_17

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comp(9582..10025)
DNA (444bp) protein (148aa)
30S ribosomal protein S17P Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12457.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17
S_p1_S3_coassembly_k141_283723_18

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comp(10027..10332)
DNA (306bp) protein (102aa)
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; species="Archaea.;" source="archaeon GW2011_AR3.;"
Translation initiation factor SUI1-related protein
S_p1_S3_coassembly_k141_283723_19

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comp(10329..10529)
DNA (201bp) protein (67aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L29
S_p1_S3_coassembly_k141_283723_20

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comp(10492..11160)
DNA (669bp) protein (223aa)
30S ribosomal protein S3 Tax=uncultured organism RepID=U3GQQ3_9ZZZZ
Marine sediment metagenome DNA, contig: S01H1_S22596 {ECO:0000313|EMBL:GAG25521.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S3
S_p1_S3_coassembly_k141_283723_21

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comp(11157..11648)
DNA (492bp) protein (164aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22
S_p1_S3_coassembly_k141_283723_22

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comp(11680..12060)
DNA (381bp) protein (127aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S19
S_p1_S3_coassembly_k141_283723_23

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comp(12075..12788)
DNA (714bp) protein (238aa)
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L2
S_p1_S3_coassembly_k141_283723_24
AR11, Woesearchaeaota, DPANN, Archaea

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comp(12789..13076)
DNA (288bp) protein (96aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
50S ribosomal protein L23P
Tax=AR11
S_p1_S3_coassembly_k141_283723_25

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comp(13073..13861)
DNA (789bp) protein (263aa)
50S ribosomal protein L4 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12167.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
S_p1_S3_coassembly_k141_283723_26
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(13858..14790)
DNA (933bp) protein (311aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
Tax=CG_Woesearch_01
S_p1_S3_coassembly_k141_283723_27
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(14977..16746)
DNA (1770bp) protein (590aa)
id=5045888 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=CG_Woesearch_01
S_p1_S3_coassembly_k141_283723_28
CG_Woesearch_02, Woesearchaeota, Archaea

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16800..17675
DNA (876bp) protein (292aa)
hypothetical protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_283723_29
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(17617..18522)
DNA (906bp) protein (302aa)
Metal-dependent hydrolase, beta-lactamase superfamily III bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
metal-dependent hydrolase, beta-lactamase superfamily III
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_283723_30
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(18519..19562)
DNA (1044bp) protein (348aa)
Glycosyl transferase group 1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXJ7_METFV
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADP77029.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 /; V24 S).;"
Displaying items 1-30 of 44 in total

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