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S_p1_S3_coassembly_k141_1413534

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1413534_1

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comp(108..395)
DNA (288bp) protein (96aa)
Replication factor A1 {ECO:0000313|EMBL:KHO50628.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
Nucleic acid binding OB-fold tRNA/helicase-type bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative nucleic acid binding OB-fold tRNA/helicase-type
S_p1_S3_coassembly_k141_1413534_2

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comp(392..1879)
DNA (1488bp) protein (496aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase {ECO:0000313|EMBL:KHO52157.1}; Flags: Fragment;; species="Archaea.;" source="archaeon GW2011_AR11.;"
Glycyl-tRNA synthetase bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
S_p1_S3_coassembly_k141_1413534_3
Thermotoga sp. RQ7, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

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2117..4258
DNA (2142bp) protein (714aa)
RNA polymerase sigma factor SigA Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=B9K8D5_THENN
RNA polymerase sigma factor rpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga sp. RQ7.;"
S_p1_S3_coassembly_k141_1413534_4
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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4994..5869
DNA (876bp) protein (292aa)
Uncharacterized protein {ECO:0000313|EMBL:EKF01223.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
Drug/metabolite transporter permease bin=GWF2_Bacteroidetes_33_38 species=Thermococcus barophilus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
S_p1_S3_coassembly_k141_1413534_trna_1
unknown

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5925..5998
DNA (74bp)
transferRNA Phe
S_p1_S3_coassembly_k141_1413534_5
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6175..8352)
DNA (2178bp) protein (726aa)
hypothetical protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_1413534_6
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(8342..10594)
DNA (2253bp) protein (751aa)
hypothetical protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_03
S_p1_S3_coassembly_k141_1413534_7

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10682..11062
DNA (381bp) protein (127aa)
id=5048513 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45547.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S_p1_S3_coassembly_k141_1413534_8

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11651..12253
DNA (603bp) protein (201aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51138.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
S_p1_S3_coassembly_k141_1413534_9
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(12276..13130)
DNA (855bp) protein (285aa)
hypothetical protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_1413534_10
unknown

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comp(13163..13393)
DNA (231bp) protein (77aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1413534_11

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comp(13497..16046)
DNA (2550bp) protein (850aa)
Marine sediment metagenome DNA, contig: S01H1_L04350 {ECO:0000313|EMBL:GAF84016.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein; K06915 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
S_p1_S3_coassembly_k141_1413534_12

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comp(16086..16523)
DNA (438bp) protein (146aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50637.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
Uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
exosome subunit
S_p1_S3_coassembly_k141_1413534_13
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(16520..17716)
DNA (1197bp) protein (399aa)
UPF0095 protein Arcve_0273 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_1413534_14
CG_Woesearch_02, Woesearchaeota, Archaea

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18074..19255
DNA (1182bp) protein (394aa)
replication factor C large subunit; K04800 replication factor C large subunit bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor C large subunit
Tax=CG_Woesearch_02
Displaying 15 items

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