ggKbase home page

S_p1_S3_coassembly_k141_1644593

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1644593_1
unknown

Not on your lists

166..1707
DNA (1542bp) protein (514aa)
cell envelope biogenesis protein OmpA Tax=Hymenobacter norwichensis RepID=UPI0003B41563
hypothetical protein
S_p1_S3_coassembly_k141_1644593_2
unknown

Not on your lists

1767..2507
DNA (741bp) protein (247aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1644593_3
unknown

Not on your lists

3303..5429
DNA (2127bp) protein (709aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1644593_4
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

5447..5875
DNA (429bp) protein (143aa)
Ribonuclease VapC Tax=Thermococcus sp. AM4 RepID=B7R4R9_9EURY
PIN domain-containing protein
Tax=AR17
S_p1_S3_coassembly_k141_1644593_5

Not on your lists

comp(5841..6173)
DNA (333bp) protein (111aa)
hypothetical protein Tax=unclassified candidate division EM 19 RepID=UPI00037ACEC8
Marine sediment metagenome DNA, contig: S01H4_S14527 {ECO:0000313|EMBL:GAH09312.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nucleotidyltransferase
S_p1_S3_coassembly_k141_1644593_6

Not on your lists

comp(6149..6508)
DNA (360bp) protein (120aa)
Putative uncharacterized protein Tax=uncultured archaeon GZfos13E1 RepID=Q64E88_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AAU82289.1}; species="Archaea; environmental samples.;" source="uncultured archaeon GZfos13E1.;"
hypothetical protein
S_p1_S3_coassembly_k141_1644593_7
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

comp(6647..6922)
DNA (276bp) protein (92aa)
hypothetical protein; K09728 hypothetical protein bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Tax=CG_Pacearch_04
S_p1_S3_coassembly_k141_1644593_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(6915..7100)
DNA (186bp) protein (62aa)
UPI000021CFC7 related cluster bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_1644593_9
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(7097..7861)
DNA (765bp) protein (255aa)
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal RNA-processing protein RRP42
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_1644593_10

Not on your lists

comp(7858..8559)
DNA (702bp) protein (234aa)
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Exosome complex component RRP41 {ECO:0000313|EMBL:KHO45786.1}; species="Archaea.;" source="archaeon GW2011_AR4.;"
exosome complex exonuclease Rrp41
S_p1_S3_coassembly_k141_1644593_11
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8556..9233)
DNA (678bp) protein (226aa)
rpr43; exosome RNA binding protein (EC:3.1.13.-); K03679 exosome complex component RRP4 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
putative exosome complex RNA-binding protein 1
Tax=AR11
S_p1_S3_coassembly_k141_1644593_12

Not on your lists

comp(9230..9955)
DNA (726bp) protein (242aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA {ECO:0000256|HAMAP-Rule:MF_00289}; species="Archaea.;" source="archaeon GW2011_AR3.;"
Proteasome subunit alpha
S_p1_S3_coassembly_k141_1644593_13
Pyrococcus furiosus, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(9961..10296)
DNA (336bp) protein (112aa)
Ribonuclease P protein component 2 {ECO:0000255|HAMAP-Rule:MF_00755}; Short=RNase P component 2 {ECO:0000255|HAMAP-Rule:MF_00755};; EC=3.1.26.5 {ECO:0000255|HAMAP-Rule:MF_00755};; Pop5 {ECO:0000255|HAMAP-Rule:MF_00755}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1).;"
Ribonuclease P protein component 2 Tax=Pyrococcus furiosus RepID=RNP2_PYRFU
Ribonuclease P protein component 2
S_p1_S3_coassembly_k141_1644593_14

Not on your lists

comp(10794..11036)
DNA (243bp) protein (81aa)
secE; preprotein translocase subunit SecE; K07342 protein transport protein SEC61 subunit gamma and related proteins bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; Protein transport protein Sec61 gamma subunit homolog {ECO:0000256|HAMAP-Rule:MF_00422}; species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S_p1_S3_coassembly_k141_1644593_15

Not on your lists

comp(11076..11426)
DNA (351bp) protein (117aa)
dCMP deaminase Tax=uncultured bacterium RepID=K1Z0C6_9BACT
dCMP deaminase {ECO:0000313|EMBL:EKD42922.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 15 items

View Taxonomy