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S_p1_S3_coassembly_k141_872304

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_872304_1
GWA2_OP3_52_12_curated, Omnitrophica, Bacteria

Not on your lists

comp(35..418)
DNA (384bp) protein (128aa)
Putative uncharacterized protein bin=GWA2_OP3_52_12 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
conserved protein of unknown function[Include Cupin domain ]
Tax=GWA2_OP3_52_12_curated
S_p1_S3_coassembly_k141_872304_2
GWC2_OD1_44_8_partial, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

505..1239
DNA (735bp) protein (245aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT77454.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_44_8.;"
Short-chain dehydrogenase/reductase SDR bin=GWA2_OP3_52_12 species=Methanohalobium evestigatum genus=Methanohalobium taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
short-chain dehydrogenase/reductase SDR
S_p1_S3_coassembly_k141_872304_3
GWB1_OP11_41_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

1270..2511
DNA (1242bp) protein (414aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2CNL9_9BACT
SAM-dependent methyltransferase {ECO:0000313|EMBL:KKS12700.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_41_5.;"
hypothetical protein
S_p1_S3_coassembly_k141_872304_4
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

2517..3494
DNA (978bp) protein (326aa)
glycosyl transferase family protein bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Glycosyl transferase family protein
Tax=CG_Woesearch_01
S_p1_S3_coassembly_k141_872304_5
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

3500..4180
DNA (681bp) protein (227aa)
Glycosyl transferase family 2 Tax=uncultured bacterium RepID=K2FPL8_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:KKR58633.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWC2_40_30.;"
family 2 glycosyl transferase
S_p1_S3_coassembly_k141_872304_6
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

4261..4461
DNA (201bp) protein (67aa)
Tax=CG_Elusi_05
S_p1_S3_coassembly_k141_872304_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

4486..6213
DNA (1728bp) protein (576aa)
Putative carbamoyl transferase; K00612 carbamoyltransferase [EC:2.1.3.-] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=bin1_lowGC organism_group=Unknown_CP
carbamoyl transferase
Tax=CSP1_2_Dadabacteria
S_p1_S3_coassembly_k141_872304_8
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(6203..7786)
DNA (1584bp) protein (528aa)
hypothetical protein Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI000368D112
hypothetical protein
Tax=RBG_16_Micrarchaeota_49_10_curated
S_p1_S3_coassembly_k141_872304_9
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

7980..9512
DNA (1533bp) protein (511aa)
Radical SAM domain protein Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBK1_9FIRM
radical SAM domain-containing protein
Tax=RBG_16_Micrarchaeota_49_10_curated
S_p1_S3_coassembly_k141_872304_10
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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9547..10518
DNA (972bp) protein (324aa)
Glycosyl transferase family 2 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Natrinema gari genus=Natrinema taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
glycosyl transferase
Tax=RBG_16_Micrarchaeota_36_9_curated
S_p1_S3_coassembly_k141_872304_11
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

10520..11560
DNA (1041bp) protein (347aa)
Glycosyl transferase group 1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJR4_METNO
group 1 glycosyl transferase
Tax=RBG_16_Micrarchaeota_49_10_curated
S_p1_S3_coassembly_k141_872304_12
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11557..12873)
DNA (1317bp) protein (439aa)
UDP-glucose 6-dehydrogenase Tax=Clostridium acetobutylicum RepID=F0K8W9_CLOAE
UDP-glucose 6-dehydrogenase
Predicted UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:AAK81242.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
S_p1_S3_coassembly_k141_872304_13
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

12954..15176
DNA (2223bp) protein (741aa)
oligosaccharyl transferase STT3 subunit; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
oligosaccharyl transferase, STT3 subunit
Tax=RBG_16_Micrarchaeota_49_10_curated
S_p1_S3_coassembly_k141_872304_14
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

15207..15413
DNA (207bp) protein (69aa)
DNA-binding protein HMt-1.2 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=HMT2_METTH
histone HMtA2
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_15
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

15435..16388
DNA (954bp) protein (318aa)
Replication factor-A C terminal domain, OB-fold nucleic acid binding domain family protein bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
OB-fold tRNA/helicase-type nucleic acid binding protein
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_16
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

16389..17336
DNA (948bp) protein (316aa)
DNA repair and recombination RadA-like protein; K04483 DNA repair protein RadA bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
radA; DNA repair and recombination protein RadA
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_17
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(17338..17904)
DNA (567bp) protein (189aa)
Uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR15
S_p1_S3_coassembly_k141_872304_18
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists


17931..18554
DNA (624bp) protein (208aa)
o-sialoglycoprotein endopeptidase (EC:3.4.24.57)
O-sialoglycoprotein endopeptidase Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B3D796
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_19
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

18563..18796
DNA (234bp) protein (78aa)
Tax=CG_Aenigma_01
S_p1_S3_coassembly_k141_872304_20
Methanocaldococcus villosus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists


18797..19255
DNA (459bp) protein (153aa)
30S ribosomal protein S15 Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B64717
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus villosus KIN24-T80.;"
rps15p; 30S ribosomal protein S15P
S_p1_S3_coassembly_k141_872304_21
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists


19325..19888
DNA (564bp) protein (188aa)
hypothetical protein Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B2FAEE
ribosomal protein S3AE
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_22
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(19866..20993)
DNA (1128bp) protein (376aa)
hypothetical protein Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B4CFD2
Peptidase M50
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_trna_1
unknown

Not on your lists

comp(21026..21111)
DNA (86bp)
transferRNA Leu
S_p1_S3_coassembly_k141_872304_23
Ignisphaera aggregans, Ignisphaera, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(21113..21787)
DNA (675bp) protein (225aa)
Nucleotidyl transferase Tax=Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1) RepID=E0STD7_IGNAA
nucleotidyltransferase
Nucleotidyl transferase {ECO:0000313|EMBL:ADM28723.1}; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignisphaera.;" source="Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1).;"
S_p1_S3_coassembly_k141_872304_24
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(21789..22577)
DNA (789bp) protein (263aa)
tRNA (guanine-N1)-methyltransferase Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B53C75
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_25
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

22630..23385
DNA (756bp) protein (252aa)
diphthine synthase (EC:2.1.1.98)
diphthine synthase Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B41E2B
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_26
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

23375..23956
DNA (582bp) protein (194aa)
Putative uncharacterized protein Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D885_METSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG17824.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
S_p1_S3_coassembly_k141_872304_27
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(23960..24523)
DNA (564bp) protein (188aa)
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_28
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(24580..25137)
DNA (558bp) protein (186aa)
hypothetical protein Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B59526
Tax=RBG_13_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_872304_29
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(25138..25677)
DNA (540bp) protein (180aa)
hypothetical protein Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B7AAFD
Tax=RBG_16_Micrarchaeota_49_10_curated
Displaying items 1-30 of 37 in total

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