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S_p1_S3_coassembly_k141_2012394

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_2012394_1
CG_Woesearch_03, Woesearchaeota, Archaea

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2..331
DNA (330bp) protein (110aa)
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
Tax=CG_Woesearch_03
S_p1_S3_coassembly_k141_2012394_2

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337..708
DNA (372bp) protein (124aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L24
S_p1_S3_coassembly_k141_2012394_3
AR11, Woesearchaeaota, DPANN, Archaea

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705..1364
DNA (660bp) protein (220aa)
30S ribosomal protein S4e Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD1_METFV
30S ribosomal protein S4e
Tax=AR11
S_p1_S3_coassembly_k141_2012394_4

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1361..1879
DNA (519bp) protein (173aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
S_p1_S3_coassembly_k141_2012394_5

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1876..2106
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46813.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
SSU ribosomal protein S14P
S_p1_S3_coassembly_k141_2012394_6

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2111..2500
DNA (390bp) protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
S_p1_S3_coassembly_k141_2012394_7

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2500..3045
DNA (546bp) protein (182aa)
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L6P
S_p1_S3_coassembly_k141_2012394_8

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3047..3625
DNA (579bp) protein (193aa)
50S ribosomal protein L32e; K02912 large subunit ribosomal protein L32e bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51172.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
50S ribosomal protein L32
S_p1_S3_coassembly_k141_2012394_9
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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3622..4068
DNA (447bp) protein (149aa)
50S ribosomal protein L19e Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD82_METIK
50S ribosomal protein L19
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5).;"
S_p1_S3_coassembly_k141_2012394_10
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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4070..4645
DNA (576bp) protein (192aa)
50S ribosomal protein L18P Tax=Pyrococcus sp. (strain NA2) RepID=F4HJN8_PYRSN
50S ribosomal protein L18P
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA2).;"
S_p1_S3_coassembly_k141_2012394_11
CG_Woesearch_02, Woesearchaeota, Archaea

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4651..5502
DNA (852bp) protein (284aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_2012394_12
CG_Micra_03, Micraarchaeota, Archaea

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5509..5925
DNA (417bp) protein (139aa)
50S ribosomal protein L30P bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ribosomal protein L30P
Tax=CG_Micra_03
S_p1_S3_coassembly_k141_2012394_13

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5925..6359
DNA (435bp) protein (145aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl15p; 50S ribosomal protein L15P
S_p1_S3_coassembly_k141_2012394_14
CG_Woesearch_02, Woesearchaeota, Archaea

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6356..7750
DNA (1395bp) protein (465aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecY
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_2012394_15

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7747..8514
DNA (768bp) protein (256aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51237.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
Uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
S_p1_S3_coassembly_k141_2012394_16

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8799..9362
DNA (564bp) protein (188aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA-box factor {ECO:0000256|HAMAP-Rule:MF_00408}; species="Archaea.;" source="archaeon GW2011_AR3.;"
TATA-box-binding protein
S_p1_S3_coassembly_k141_2012394_17

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9532..11547
DNA (2016bp) protein (672aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator protein, replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO46116.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46116.1};; species="Archaea.;" source="archaeon GW2011_AR3.;"
DNA replication initiator Cdc21/Cdc54
S_p1_S3_coassembly_k141_2012394_18
AR11, Woesearchaeaota, DPANN, Archaea

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comp(11551..12654)
DNA (1104bp) protein (368aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000381BFF6
Tax=AR11
S_p1_S3_coassembly_k141_2012394_19
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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12750..13367
DNA (618bp) protein (206aa)
Putative uncharacterized protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_2012394_20
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(13368..14216)
DNA (849bp) protein (283aa)
Uncharacterized membrane protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_2012394_21
AR4, Woesearchaeaota, DPANN, Archaea

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14296..14706
DNA (411bp) protein (137aa)
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Translation initiation factor 2 subunit beta
Tax=AR4
S_p1_S3_coassembly_k141_2012394_22

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14706..15005
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Thermococcus sp. CL1 RepID=I3ZSM6_9EURY
Marine sediment metagenome DNA, contig: S12H4_S02448 {ECO:0000313|EMBL:GAI95743.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S_p1_S3_coassembly_k141_2012394_23
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(15002..18562)
DNA (3561bp) protein (1187aa)
DNA polymerase II large subunit bin=GWA2_Bacteroidetes_40_14 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GWA2_Bacteroidetes_40_14 organism_group=Bacteroidetes organism_desc=Good
DNA polymerase II large subunit
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_2012394_24
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(18562..20073)
DNA (1512bp) protein (504aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_2012394_25
AR20, Woesearchaeaota, DPANN, Archaea

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comp(20070..21278)
DNA (1209bp) protein (403aa)
ORC1-type DNA replication protein Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QF40_9EURY bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
ORC1-type DNA replication protein
Tax=AR20
Displaying 25 items

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