ggKbase home page

S_p2_S4_coassembly_k141_1635525

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_1635525_1
unknown

Not on your lists

comp(467..862)
DNA (396bp) protein (132aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1635525_2
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

1155..1970
DNA (816bp) protein (272aa)
phage integrase family protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Phage integrase family protein
Tax=AR4
S_p2_S4_coassembly_k141_1635525_3

Not on your lists

comp(2022..2558)
DNA (537bp) protein (179aa)
Marine sediment metagenome DNA, contig: S01H1_S21807 {ECO:0000313|EMBL:GAG16603.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Helix-turn-helix, type 11 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
S_p2_S4_coassembly_k141_1635525_4

Not on your lists

comp(2615..3310)
DNA (696bp) protein (232aa)
Marine sediment metagenome DNA, contig: S01H1_L02580 {ECO:0000313|EMBL:GAF77680.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S_p2_S4_coassembly_k141_1635525_5
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

3816..4448
DNA (633bp) protein (211aa)
RNA methylase bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA methylase
Tax=AR15
S_p2_S4_coassembly_k141_1635525_6
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

4537..4815
DNA (279bp) protein (93aa)
DNA-directed RNA polymerase subunit L bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit L
Tax=CG_Woesearch_01
S_p2_S4_coassembly_k141_1635525_7

Not on your lists

4953..5456
DNA (504bp) protein (168aa)
id=5050195 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO44976.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
S_p2_S4_coassembly_k141_1635525_8
unknown

Not on your lists

5458..5673
DNA (216bp) protein (72aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1635525_9

Not on your lists

5712..6413
DNA (702bp) protein (234aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.89 {ECO:0000256|HAMAP-Rule:MF_01139};; Undecaprenyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; Undecaprenyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; species="Archaea.;" source="archaeon GW2011_AR3.;"
Tritrans,polycis-undecaprenyl-diphosphate synthase, geranylgeranyl-diphosphate specific
S_p2_S4_coassembly_k141_1635525_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

6481..7899
DNA (1419bp) protein (473aa)
Phosphoesterase, RecJ-like protein Tax=Pyrococcus sp. ST04 RepID=I3RBX6_9EURY bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Phosphoesterase, RecJ-like protein
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_1635525_11

Not on your lists

comp(7970..8245)
DNA (276bp) protein (92aa)
regulatory protein MarR bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Regulatory protein MarR {ECO:0000313|EMBL:KHO46988.1}; species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
S_p2_S4_coassembly_k141_1635525_12
uncultured Candidatus Nitrosocaldus sp., Candidatus Nitrosocaldus, Crenarchaeota, Archaea

Not on your lists

comp(8580..9149)
DNA (570bp) protein (190aa)
Uncharacterized protein bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Putative uncharacterized protein HGP-15 {ECO:0000313|EMBL:BAE95215.1}; species="Archaea; Crenarchaeota; Candidatus Nitrosocaldus; environmental samples.;" source="uncultured Candidatus Nitrosocaldus sp.;"
exported protein of unknown function
S_p2_S4_coassembly_k141_1635525_13

Not on your lists

comp(9146..10360)
DNA (1215bp) protein (405aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52453.1}; species="Archaea.;" source="archaeon GW2011_AR17.;"
id=5049633 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
S_p2_S4_coassembly_k141_1635525_14
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10370..10840)
DNA (471bp) protein (157aa)
seg bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR9
S_p2_S4_coassembly_k141_1635525_15
unknown

Not on your lists

comp(10847..11047)
DNA (201bp) protein (67aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1635525_16
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11071..11271)
DNA (201bp) protein (67aa)
Tax=AR17
S_p2_S4_coassembly_k141_1635525_17
R_OD1_Uhrbacteria_46_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11564..12667)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_ANIW137N13 RepID=B3T4X3_9ARCH bin=RAAC2_WWE3 species=uncultured marine crenarchaeote HF4000_ANIW137N13 genus=unknown taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=RAAC2_WWE3 organism_group=WWE3
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_46_25_curated
S_p2_S4_coassembly_k141_1635525_18
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12795..13508)
DNA (714bp) protein (238aa)
Cytochrome c biogenesis protein, transmembrane region Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV45_RUBXD
cytochrome c biogenesis protein, transmembrane region
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:ABG04733.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S_p2_S4_coassembly_k141_1635525_19
Bacillus methanolicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13510..14043)
DNA (534bp) protein (178aa)
Thiol-disulfide oxidoreductase Tax=Bacillus methanolicus MGA3 RepID=I3EA31_BACMT
Thiol-disulfide oxidoreductase resA
Thiol-disulfide oxidoreductase resA {ECO:0000313|EMBL:AIE60594.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus methanolicus MGA3.;"
S_p2_S4_coassembly_k141_1635525_20
Aphanizomenon flos-aquae, Aphanizomenon, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14057..15064)
DNA (1008bp) protein (336aa)
hypothetical protein Tax=Anabaena sp. PCC 7108 RepID=UPI00034D01AD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHG38984.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.;" source="Aphanizomenon flos-aquae 2012/KM1/D3.;"
S_p2_S4_coassembly_k141_1635525_21

Not on your lists

comp(15051..16007)
DNA (957bp) protein (319aa)
cytochrome c biogenesis protein, transmembrane region; K06196 cytochrome c-type biogenesis protein bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:KHO53675.1}; species="Archaea.;" source="archaeon GW2011_AR18.;"
integral membrane protein, DsbD family
S_p2_S4_coassembly_k141_1635525_22
unknown

Not on your lists

comp(16040..16516)
DNA (477bp) protein (159aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1635525_23
RLO_OD1_41_13, Parcubacteria, Bacteria

Not on your lists

comp(16513..17010)
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EJV5_9BACT
Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
S_p2_S4_coassembly_k141_1635525_24
R_OP11_Levybacteria_42_15, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(17012..17719)
DNA (708bp) protein (236aa)
Putative uncharacterized protein HGP-15 Tax=uncultured Candidatus Nitrosocaldus sp. RepID=Q1ERB1_9CREN
dsbG; protein-disulfide isomerase
Tax=RIFCSPLOWO2_01_FULL_OP11_Levybacteria_42_15_curated
Displaying 24 items

View Taxonomy