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S_p2_S4_coassembly_k141_227530

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_227530_1
CG_Woesearch_02, Woesearchaeota, Archaea

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80..406
DNA (327bp) protein (109aa)
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_227530_2

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comp(407..832)
DNA (426bp) protein (142aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000377C38B
Uncharacterized protein {ECO:0000313|EMBL:KHO51871.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
S_p2_S4_coassembly_k141_227530_3

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987..1292
DNA (306bp) protein (102aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003600E98
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; species="Archaea.;" source="archaeon GW2011_AR18.;"
50S ribosomal protein L21e
S_p2_S4_coassembly_k141_227530_4
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

1279..1611
DNA (333bp) protein (111aa)
RNA polymerase II, Rpb4 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_227530_5
CG_Woesearch_02, Woesearchaeota, Archaea

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1644..2513
DNA (870bp) protein (290aa)
Putative HTH-type transcriptional regulatory protein Metin_1036 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VSZ1_METIM
transcriptional regulator, XRE family
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_227530_6
GWF2_WWE1X_40_14_curated, WWE1X, Bacteria

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2506..2712
DNA (207bp) protein (69aa)
Putative uncharacterized protein bin=GWF2_WWE1_40_14 species=Reinekea blandensis genus=Reinekea taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_WWE1_40_14 organism_group=WWE1
hypothetical protein
Tax=GWF2_WWE1X_40_14_curated
S_p2_S4_coassembly_k141_227530_7
Smithella sp. F21, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2914..3762)
DNA (849bp) protein (283aa)
DNA-damage-inducible protein D family protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B4701D
Damage-inducible protein D {ECO:0000313|EMBL:KFN37737.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. F21.;"
hypothetical protein
S_p2_S4_coassembly_k141_227530_8
AR15, Woesearchaeaota, DPANN, Archaea

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comp(4113..4436)
DNA (324bp) protein (108aa)
id=5799837 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR15
S_p2_S4_coassembly_k141_227530_9
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

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4512..5237
DNA (726bp) protein (242aa)
GTP-binding protein YlqF; K06948 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
S_p2_S4_coassembly_k141_227530_10
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(5161..5589)
DNA (429bp) protein (143aa)
antirepressor Tax=Treponema bryantii RepID=UPI0003B7A346
prophage antirepressor
Tax=GWA2_Bacteroidetes_31_9_curated
S_p2_S4_coassembly_k141_227530_11
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5782..6084
DNA (303bp) protein (101aa)
Toxin-antitoxin system toxin component Fic domain protein Tax=Prevotella copri CAG:164 RepID=R6CN89_9BACT
Toxin-antitoxin system toxin component Fic domain protein {ECO:0000313|EMBL:CDA66732.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
KilA-N, DNA-binding domain-containing protein
S_p2_S4_coassembly_k141_227530_12
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

comp(6573..7214)
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP28281.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_31_28.;"
hypothetical protein
S_p2_S4_coassembly_k141_227530_13
unknown

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comp(7336..7521)
DNA (186bp) protein (62aa)

This feature has no annotations

S_p2_S4_coassembly_k141_227530_14
unknown

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7731..8264
DNA (534bp) protein (178aa)

This feature has no annotations

S_p2_S4_coassembly_k141_227530_15
CG_Woesearch_02, Woesearchaeota, Archaea

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8480..10111
DNA (1632bp) protein (544aa)
Thermosome, chaperonin Cpn60/TCP-1 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Thermosome, chaperonin Cpn60/TCP-1
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_227530_16
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(10113..10712)
DNA (600bp) protein (200aa)
O-sialoglycoprotein endopeptidase bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_227530_17

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comp(10738..11244)
DNA (507bp) protein (169aa)
hypothetical protein
id=5103354 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62635.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p2_S4_coassembly_k141_227530_18
AR20, Woesearchaeaota, DPANN, Archaea

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comp(11241..11822)
DNA (582bp) protein (194aa)
hypothetical protein
id=5103355 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
S_p2_S4_coassembly_k141_227530_19
CG_OP9-01, Atribacteria, Bacteria

Not on your lists

comp(12111..13652)
DNA (1542bp) protein (514aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
IMP cyclohydrolase Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037FF94F
Tax=CG_OP9-01
S_p2_S4_coassembly_k141_227530_20

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comp(13645..14256)
DNA (612bp) protein (204aa)
purN; phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphoribosylglycinamide formyltransferase 1 {ECO:0000313|EMBL:KHO46622.1}; EC=2.1.2.2 {ECO:0000313|EMBL:KHO46622.1};; species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S_p2_S4_coassembly_k141_227530_21

Not on your lists

comp(14287..15132)
DNA (846bp) protein (282aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
Bifunctional protein FolD {ECO:0000313|EMBL:KKW24920.1}; species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
S_p2_S4_coassembly_k141_227530_22

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comp(15129..16439)
DNA (1311bp) protein (437aa)
glycine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_00051};; species="Archaea.;" source="archaeon GW2011_AR3.;"
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
S_p2_S4_coassembly_k141_227530_23
Persephonella marina, Persephonella, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(16468..17025)
DNA (558bp) protein (186aa)
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Persephonella.;" source="Persephonella marina (strain DSM 14350 / EX-H1).;"
5-formyltetrahydrofolate cyclo-ligase Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=C0QT53_PERMH
S_p2_S4_coassembly_k141_227530_24
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17022..18329)
DNA (1308bp) protein (436aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
S_p2_S4_coassembly_k141_227530_25
unknown

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comp(18336..18629)
DNA (294bp) protein (98aa)

This feature has no annotations

S_p2_S4_coassembly_k141_227530_26

Not on your lists

18747..19784
DNA (1038bp) protein (346aa)
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase {ECO:0000256|HAMAP-Rule:MF_01163}; EC=6.3.4.23 {ECO:0000256|HAMAP-Rule:MF_01163};; 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate--formate ligase {ECO:0000256|HAMAP-Rule:MF_01163}; species="Archaea.;" source="archaeon GW2011_AR11.;"
phosphoribosylaminoimidazolecarboxamide formyltransferase; K06863 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
phosphoribosylaminoimidazolecarboxamide formyltransferase
S_p2_S4_coassembly_k141_227530_27
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

19762..20889
DNA (1128bp) protein (376aa)
ATP-utilizing enzymes of ATP-grasp superfamily (Probably carboligase) Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T917_9EURY
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
Tax=AR11
S_p2_S4_coassembly_k141_227530_28
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

20886..22418
DNA (1533bp) protein (511aa)
rmr:Rmar_0677 GMP synthase, large subunit; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] bin=ACD30 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
GMP synthase, large subunit
Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
S_p2_S4_coassembly_k141_227530_29
RBG_13_Lokiarchaeota_45_8_curated, Lokiarchaeota, Archaea

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comp(22451..23578)
DNA (1128bp) protein (376aa)
Carboxynorspermidine decarboxylase Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WF18_DESOD
carboxynorspermidine decarboxylase
Tax=RBG_13_Lokiarchaeota_45_8_curated
S_p2_S4_coassembly_k141_227530_30

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comp(23542..24756)
DNA (1215bp) protein (405aa)
dap:Dacet_2596 saccharopine dehydrogenase; K00290 saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7] bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
saccharopine dehydrogenase (EC:1.5.1.7)
Uncharacterized protein {ECO:0000313|EMBL:EKD27753.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 49 in total

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