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S_p2_S4_coassembly_k141_3467655

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_3467655_1
AR11, Woesearchaeaota, DPANN, Archaea

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comp(26..1426)
DNA (1401bp) protein (467aa)
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
Tax=AR11
S_p2_S4_coassembly_k141_3467655_2

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comp(1389..1868)
DNA (480bp) protein (160aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
S_p2_S4_coassembly_k141_3467655_3
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(1870..2298)
DNA (429bp) protein (143aa)
rpl30p; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rpl30p; 50S ribosomal protein L30
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_3467655_4
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(2291..3076)
DNA (786bp) protein (262aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_3467655_5

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comp(3079..3660)
DNA (582bp) protein (194aa)
50S ribosomal protein L18P Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=RL18_META3
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18
S_p2_S4_coassembly_k141_3467655_6
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(3657..4106)
DNA (450bp) protein (150aa)
ribosomal protein L19e; K02885 large subunit ribosomal protein L19e bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rpl19e; 50S ribosomal protein L19
Tax=CG_Woesearch_03
S_p2_S4_coassembly_k141_3467655_7

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comp(4103..4636)
DNA (534bp) protein (178aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037197A6
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51172.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
rpl32e; 50S ribosomal protein L32e
S_p2_S4_coassembly_k141_3467655_8

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comp(4633..5190)
DNA (558bp) protein (186aa)
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12291.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L6P
S_p2_S4_coassembly_k141_3467655_9

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comp(5191..5577)
DNA (387bp) protein (129aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
S_p2_S4_coassembly_k141_3467655_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(5592..5822)
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p2_S4_coassembly_k141_3467655_11

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comp(5823..6335)
DNA (513bp) protein (171aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl5p; 50S ribosomal protein L5
S_p2_S4_coassembly_k141_3467655_12

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comp(6332..7009)
DNA (678bp) protein (226aa)
30S ribosomal protein S4e Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD1_METFV
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S4e
S_p2_S4_coassembly_k141_3467655_13
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(6996..7391)
DNA (396bp) protein (132aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24
Tax=CG_Pacearch_04
S_p2_S4_coassembly_k141_3467655_14

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comp(7393..7794)
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
S_p2_S4_coassembly_k141_3467655_15

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comp(7781..8197)
DNA (417bp) protein (139aa)
30S ribosomal protein S17P Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12010.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17
S_p2_S4_coassembly_k141_3467655_16
unknown

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comp(8202..8453)
DNA (252bp) protein (84aa)
hypothetical protein Tax=candidate division YNPFFA RepID=UPI00036C87DD
S_p2_S4_coassembly_k141_3467655_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(8459..8767)
DNA (309bp) protein (103aa)
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
translation initiation factor 1 (eIF-1/SUI1)
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p2_S4_coassembly_k141_3467655_18
Methanococcus aeolicus, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(8764..8964)
DNA (201bp) protein (67aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003780B5A
50S ribosomal protein L29
50S ribosomal protein L29P {ECO:0000255|HAMAP-Rule:MF_00374}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280).;"
S_p2_S4_coassembly_k141_3467655_19

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comp(8957..9685)
DNA (729bp) protein (243aa)
30S ribosomal protein S3 Tax=uncultured organism RepID=U3GQK3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
S_p2_S4_coassembly_k141_3467655_20
AR11, Woesearchaeaota, DPANN, Archaea

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comp(9712..10173)
DNA (462bp) protein (154aa)
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ribosomal protein L22/L17
Tax=AR11
S_p2_S4_coassembly_k141_3467655_21

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comp(10174..10557)
DNA (384bp) protein (128aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps19p; 30S ribosomal protein S19
S_p2_S4_coassembly_k141_3467655_22

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comp(10560..11273)
DNA (714bp) protein (238aa)
50S ribosomal protein L2 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=RL2_PYRHO
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl2p; 50S ribosomal protein L2
S_p2_S4_coassembly_k141_3467655_23

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comp(11274..11528)
DNA (255bp) protein (85aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
Large subunit ribosomal protein L23 {ECO:0000313|EMBL:KHO46800.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L23P
S_p2_S4_coassembly_k141_3467655_24

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comp(11525..12337)
DNA (813bp) protein (271aa)
50S ribosomal protein L4 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12462.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
S_p2_S4_coassembly_k141_3467655_25

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comp(12339..13316)
DNA (978bp) protein (326aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
S_p2_S4_coassembly_k141_3467655_26
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(13546..14772)
DNA (1227bp) protein (409aa)
DEAD/DEAH box helicase-like protein Tax=Methanolobus psychrophilus R15 RepID=K4MIF2_9EURY
DEAD/DEAH box helicase-like protein
DEAD/DEAH box helicase-like protein {ECO:0000313|EMBL:AFV24949.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
S_p2_S4_coassembly_k141_3467655_27
CG_CPR01_01, CG_CPR01, Bacteria

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15060..15716
DNA (657bp) protein (219aa)
Methyltransferase Tax=Pelagibacter phage HTVC008M RepID=M1HM05_9CAUD
type 12 methyltransferase
Tax=CG_CPR01_01
S_p2_S4_coassembly_k141_3467655_28

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comp(15809..16702)
DNA (894bp) protein (298aa)
RNA-directed DNA polymerase bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNA-directed DNA polymerase {ECO:0000313|EMBL:KHO45161.1}; Flags: Fragment;; species="Archaea.;" source="archaeon GW2011_AR3.;"
RNA-directed DNA polymerase Reverse transcriptase
Displaying 28 items

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