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S36_SO-2_scaffold_107009

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_107009_1
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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comp(2..259)
DNA (258bp) protein (86aa)
hypothetical protein id=5802631 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
prophage antirepressor
Tax=CG_Aenigma_01
S36_SO-2_scaffold_107009_2
unknown

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comp(256..591)
DNA (336bp) protein (112aa)

This feature has no annotations

S36_SO-2_scaffold_107009_3
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(617..1600)
DNA (984bp) protein (328aa)
restriction endonuclease
Restriction endonuclease {ECO:0000313|EMBL:CEA13364.1}; TaxID=2162 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium formicicum.;"
Probable restriction endonuclease protein id=1796620 bin=GWD2_Bacteroidetes_33_33 species=Rhizobium etli genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
S36_SO-2_scaffold_107009_4
unknown

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comp(1919..2050)
DNA (132bp) protein (44aa)

This feature has no annotations

S36_SO-2_scaffold_107009_5

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2252..3244
DNA (993bp) protein (331aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5041759 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L3
S36_SO-2_scaffold_107009_6

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3247..4053
DNA (807bp) protein (269aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12056.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
S36_SO-2_scaffold_107009_7

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4064..4330
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
50S ribosomal protein L23P
S36_SO-2_scaffold_107009_8

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4346..5065
DNA (720bp) protein (240aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12055.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=5042303 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L2
S36_SO-2_scaffold_107009_9

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5111..5494
DNA (384bp) protein (128aa)
30S ribosomal protein S19 n=2 Tax=Pyrococcus RepID=RS19_PYRAB
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19P
S36_SO-2_scaffold_107009_10

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5534..6013
DNA (480bp) protein (160aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22P id=5800059 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L22
S36_SO-2_scaffold_107009_11

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6010..6792
DNA (783bp) protein (261aa)
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps3p; 30S ribosomal protein S3P; K02982 small subunit ribosomal protein S3 id=5042306 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S3
S36_SO-2_scaffold_107009_12
AR4, Woesearchaeaota, DPANN, Archaea

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6782..6982
DNA (201bp) protein (67aa)
Ribosomal protein L29 id=5041766 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L29
Tax=AR4
S36_SO-2_scaffold_107009_13
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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6979..7287
DNA (309bp) protein (103aa)
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 id=5042308 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
translation factor SUi1-like protein
Tax=RBG_13_Woesearchaeota_36_6_curated
S36_SO-2_scaffold_107009_14
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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7311..7577
DNA (267bp) protein (89aa)
rnp1; ribonuclease P, component 1 (EC:3.1.26.5); K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] id=18311813 bin=Haloredivivus species=unknown genus=unknown taxon_order=unknown taxon_class=Nanohaloarchaea phylum=Euryarchaeota tax=Haloredivivus
ribonuclease P, Rpp29
Tax=RBG_16_Micrarchaeota_36_9_curated
S36_SO-2_scaffold_107009_15

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7582..7860
DNA (279bp) protein (93aa)
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P id=5800054 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
small subunit ribosomal protein S17
S36_SO-2_scaffold_107009_16

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7863..8264
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
S36_SO-2_scaffold_107009_17

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8304..8714
DNA (411bp) protein (137aa)
50S ribosomal protein L24P n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YSM5_THEON id=5103263 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24P
S36_SO-2_scaffold_107009_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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8715..9410
DNA (696bp) protein (232aa)
30S ribosomal protein S4e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD1_METFV id=5103264 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S4e
Tax=RBG_13_Woesearchaeota_36_6_curated
S36_SO-2_scaffold_107009_19

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9426..9950
DNA (525bp) protein (175aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
S36_SO-2_scaffold_107009_20

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10193..10585
DNA (393bp) protein (131aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=5041774 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rps8; 30S ribosomal protein S8
S36_SO-2_scaffold_107009_21

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10600..11136
DNA (537bp) protein (179aa)
50S ribosomal protein L6 n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=RL6_PYRAB
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12046.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl6p; 50S ribosomal protein L6
S36_SO-2_scaffold_107009_22
AR4, Woesearchaeaota, DPANN, Archaea

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11145..11747
DNA (603bp) protein (201aa)
50S ribosomal protein L32e; K02912 large subunit ribosomal protein L32e id=5041776 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L32e
Tax=AR4
S36_SO-2_scaffold_107009_23
CG_Woesearch_02, Woesearchaeota, Archaea

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11755..12225
DNA (471bp) protein (157aa)
ribosomal protein L19e; K02885 large subunit ribosomal protein L19e id=5041777 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ribosomal protein L19e
Tax=CG_Woesearch_02
S36_SO-2_scaffold_107009_24

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12222..12761
DNA (540bp) protein (180aa)
50S ribosomal protein L18P n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXV1_FERPA
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
S36_SO-2_scaffold_107009_25
AR4, Woesearchaeaota, DPANN, Archaea

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12736..13584
DNA (849bp) protein (283aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
Tax=AR4
S36_SO-2_scaffold_107009_26

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13586..14023
DNA (438bp) protein (146aa)
rpl30p; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 id=5042322 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L30, large subunit ribosomal protein L30 {ECO:0000313|EMBL:KHO46820.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rpl30p; 50S ribosomal protein L30
S36_SO-2_scaffold_107009_27

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14025..14516
DNA (492bp) protein (164aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
S36_SO-2_scaffold_107009_28

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14542..15972
DNA (1431bp) protein (477aa)
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5042324 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecY
S36_SO-2_scaffold_107009_29
AR15, Woesearchaeaota, DPANN, Archaea

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15974..16765
DNA (792bp) protein (264aa)
Uncharacterized protein id=5800172 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=AR15
S36_SO-2_scaffold_107009_30
AR20, Woesearchaeaota, DPANN, Archaea

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16833..17909
DNA (1077bp) protein (359aa)
DSBA oxidoreductase n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5N9_NITMS id=5103511 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DSBA oxidoreductase
Tax=AR20
Displaying items 1-30 of 126 in total

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