ggKbase home page

S36_SO-2_scaffold_554893

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_554893_1
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

304..1539
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI00036DDE3F
hypothetical protein
Tax=CG_Woesearch_03
S36_SO-2_scaffold_554893_2
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1542..2135
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZF11_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AKB23579.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. MTP4.;"
hypothetical protein
S36_SO-2_scaffold_554893_3
GWF2_OP11_38_6, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(2283..3161)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000364965B
Uncharacterized protein {ECO:0000313|EMBL:KKQ76877.1}; Flags: Fragment;; TaxID=1618432 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWF2_38_6.;"
hypothetical protein
S36_SO-2_scaffold_554893_4
GWF2_OP11_38_6, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(3374..3658)
DNA (285bp) protein (95aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ76877.1}; Flags: Fragment;; TaxID=1618432 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWF2_38_6.;"
S36_SO-2_scaffold_554893_5
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(3901..6111)
DNA (2211bp) protein (737aa)
Hef nuclease; K10896 fanconi anemia group M protein id=5041753 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
fanconi anemia group M protein
Tax=CG_Woesearch_02
S36_SO-2_scaffold_554893_6
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(6166..6939)
DNA (774bp) protein (258aa)
heme/copper-type cytochrome/quinol oxidases subunit 2 id=18248543 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Tax=AR5
S36_SO-2_scaffold_554893_7

Not on your lists

comp(6955..7278)
DNA (324bp) protein (108aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO53837.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
S36_SO-2_scaffold_554893_8
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(7280..8038)
DNA (759bp) protein (253aa)
Peptidase M50 id=5041751 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR11
S36_SO-2_scaffold_554893_9

Not on your lists

comp(8094..8834)
DNA (741bp) protein (247aa)
TraB family protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VSP1_METIM id=5103107 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S01828 {ECO:0000313|EMBL:GAF88683.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TraB family protein
S36_SO-2_scaffold_554893_10

Not on your lists

8947..9228
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50522.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Putative uncharacterized protein id=5800011 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
S36_SO-2_scaffold_554893_11
unknown

Not on your lists

9324..9500
DNA (177bp) protein (59aa)

This feature has no annotations

S36_SO-2_scaffold_554893_12
R_OD1_Jorgensenbacteria_45_25b, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9551..9838)
DNA (288bp) protein (96aa)
hypothetical protein
Uncharacterised protein family UPF0175 id=5241736 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=RIFCSPLOWO2_01_FULL_OD1_Jorgensenbacteria_45_25b_curated
S36_SO-2_scaffold_554893_13

Not on your lists

comp(9839..10327)
DNA (489bp) protein (163aa)
hypothetical protein
Putative uncharacterized protein id=5241735 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60726.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
S36_SO-2_scaffold_554893_14

Not on your lists

comp(10507..10809)
DNA (303bp) protein (101aa)
id=5046309 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46110.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
S36_SO-2_scaffold_554893_15
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

11314..11922
DNA (609bp) protein (203aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PZW3_METMA
hypothetical protein
Tax=AR11
S36_SO-2_scaffold_554893_16

Not on your lists

comp(11912..12442)
DNA (531bp) protein (177aa)
id=5046299 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46100.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
S36_SO-2_scaffold_554893_17
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(12423..13010)
DNA (588bp) protein (196aa)
phosphoglycerate mutase (EC:5.4.2.1)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000363B234
Tax=CG_Nitrosp_02
S36_SO-2_scaffold_554893_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13007..13765)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037F5DB7
cobalamin 5'-phosphate synthase
Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
S36_SO-2_scaffold_554893_19
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(13758..14822)
DNA (1065bp) protein (355aa)
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase) (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YL85_THEYD
S36_SO-2_scaffold_554893_20
Parcubacteria bacterium GW2011_GWB1_52_7, Parcubacteria, Bacteria

Not on your lists

comp(15247..15993)
DNA (747bp) protein (249aa)
Polymerase sliding clamp protein {ECO:0000313|EMBL:KKW29271.1}; TaxID=1618885 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_52_7.;"
DNA polymerase sliding clamp; K04802 proliferating cell nuclear antigen id=5046287 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA polymerase sliding clamp
S36_SO-2_scaffold_554893_21
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(16060..17388)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003820EA3
RNA-metabolising metallo-beta-lactamase
Tax=AR11
S36_SO-2_scaffold_554893_22

Not on your lists

17476..18831
DNA (1356bp) protein (452aa)
hypothetical protein; K00992 [EC:2.7.7.-] id=5041758 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47186.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
S36_SO-2_scaffold_554893_23
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

18863..19051
DNA (189bp) protein (63aa)
seg id=5800104 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR11
S36_SO-2_scaffold_554893_24
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(19054..19440)
DNA (387bp) protein (129aa)
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type id=5046341 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Resolvase, Holliday junction-type
Tax=CG_Woesearch_01
S36_SO-2_scaffold_554893_25
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(19469..20359)
DNA (891bp) protein (297aa)
rnz; ribonuclease Z Rnz (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] id=5046343 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNAse Z
Tax=AR11
S36_SO-2_scaffold_554893_trna_1
unknown

Not on your lists

comp(20481..20629)
DNA (149bp)
transferRNA Pseudo
S36_SO-2_scaffold_554893_26
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

20765..21259
DNA (495bp) protein (165aa)
adenylate kinase (EC:2.7.4.3) id=5045728 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Adenylate kinase
Tax=RBG_13_Woesearchaeota_36_6_curated
S36_SO-2_scaffold_554893_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

21260..22438
DNA (1179bp) protein (393aa)
L-aspartate aminotransferase apoenzyme id=2674426 bin=GWF2_OP9-related_38_17 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
class I and II aminotransferase
Tax=GWF2_RBX1_38_17_curated
S36_SO-2_scaffold_554893_28
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

22453..22821
DNA (369bp) protein (123aa)
hypothetical protein; K09143 hypothetical protein id=14631182 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=CSP1_3_Armatimonadetes
S36_SO-2_scaffold_554893_29
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

22872..23987
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9V0U1_PYRAB
Hypothetical protein containing RNA-binding domain
Tax=RBG_13_Woesearchaeota_36_6_curated
Displaying items 1-30 of 45 in total

View Taxonomy