ggKbase home page

S36_SO-2_scaffold_243447

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_243447_1
unknown

Not on your lists

comp(2..94)
DNA (93bp) protein (31aa)

This feature has no annotations

S36_SO-2_scaffold_243447_2

Not on your lists

148..3387
DNA (3240bp) protein (1080aa)
Cell wall/surface repeat protein n=2 Tax=Clostridium cellulovorans RepID=D9STF3_CLOC7
Marine sediment metagenome DNA, contig: S01H1_S33701 {ECO:0000313|EMBL:GAG36895.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S36_SO-2_scaffold_243447_3
Caldivirga maquilingensis, Caldivirga, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


comp(3547..5511)
DNA (1965bp) protein (655aa)
Ribosomal protein S12/S23 n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MB80_CALMQ
30S ribosomal protein S12
Ribosomal protein S12/S23 {ECO:0000313|EMBL:ABW01170.1}; TaxID=397948 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Caldivirga.;" source="Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307; / IC-167).;"
S36_SO-2_scaffold_243447_4
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(5688..6065)
DNA (378bp) protein (126aa)
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A id=5043967 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
transcription elongation factor NusA-like protein
Tax=CG_Woesearch_02
S36_SO-2_scaffold_243447_5
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(6157..6420)
DNA (264bp) protein (88aa)
NEQ179 id=5799591 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30e
Tax=AR11
S36_SO-2_scaffold_243447_6

Not on your lists

comp(6433..9129)
DNA (2697bp) protein (899aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037417CB
DNA-directed RNA polymerase subunit A''
DNA-directed RNA polymerase subunit A {ECO:0000313|EMBL:AJF63054.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
S36_SO-2_scaffold_243447_7
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(9149..11749)
DNA (2601bp) protein (867aa)
DNA-directed RNA polymerase subunit A' (EC:2.7.7.48); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5043970 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
Tax=CG_Woesearch_01
S36_SO-2_scaffold_243447_8
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(11766..13565)
DNA (1800bp) protein (600aa)
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=5043971 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
Tax=CG_Woesearch_01
S36_SO-2_scaffold_243447_9
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(13592..15085)
DNA (1494bp) protein (498aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] id=5043972 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
Tax=CG_Woesearch_01
S36_SO-2_scaffold_243447_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(15160..15399)
DNA (240bp) protein (80aa)
DNA-directed RNA polymerase, subunit H n=1 Tax=nanoarchaeote Nst1 RepID=R1E493_9ARCH id=5103780 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase, subunit H
Tax=CG_Woesearch_02
S36_SO-2_scaffold_243447_trna_3
unknown

Not on your lists

comp(15662..15734)
DNA (73bp)
transferRNA Pseudo
S36_SO-2_scaffold_243447_11
unknown

Not on your lists

16213..16368
DNA (156bp) protein (52aa)

This feature has no annotations

S36_SO-2_scaffold_243447_12
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

16467..16781
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IKV2_9PLAN
hypothetical protein
Tax=RBG_13_Pacearchaeota_36_9_curated
S36_SO-2_scaffold_243447_13
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

16765..17265
DNA (501bp) protein (167aa)
Uncharacterized protein id=4830632 bin=GWC2_Nitrospirae_57_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
nucleic acid binding protein
Tax=GWC2_Nitrospirae_57_13_curated
S36_SO-2_scaffold_243447_14
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(17495..18919)
DNA (1425bp) protein (475aa)
transmembrane_regions id=5043982 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_01
S36_SO-2_scaffold_243447_trna_2
unknown

Not on your lists

comp(19193..19264)
DNA (72bp)
transferRNA Pro
S36_SO-2_scaffold_243447_15
unknown

Not on your lists

19470..19682
DNA (213bp) protein (71aa)

This feature has no annotations

S36_SO-2_scaffold_243447_16
unknown

Not on your lists

19663..19785
DNA (123bp) protein (41aa)

This feature has no annotations

S36_SO-2_scaffold_243447_17
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

comp(19791..22052)
DNA (2262bp) protein (754aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU99675.1}; Flags: Fragment;; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
smc domain protein; K03546 exonuclease SbcC id=5047118 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SMC domain-containing protein
S36_SO-2_scaffold_243447_18
unknown

Not on your lists

22129..22419
DNA (291bp) protein (97aa)

This feature has no annotations

S36_SO-2_scaffold_243447_19
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

22422..22679
DNA (258bp) protein (86aa)
Tax=AR11
S36_SO-2_scaffold_243447_20

Not on your lists

comp(22676..23671)
DNA (996bp) protein (332aa)
Bifunctional phosphoglucose/phosphomannose isomerase (Pgi-pmi) {ECO:0000313|EMBL:AIF00813.1}; EC=5.3.1.8 {ECO:0000313|EMBL:AIF00813.1};; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_139_C07.;"
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CN91_DESK7
S36_SO-2_scaffold_243447_21
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

23903..24478
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003635C84
50S ribosomal protein L15e {ECO:0000313|EMBL:KKU99679.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
50S ribosomal protein L15e
S36_SO-2_scaffold_243447_22
unknown

Not on your lists

24540..24722
DNA (183bp) protein (61aa)

This feature has no annotations

S36_SO-2_scaffold_243447_23
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24768..25760)
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XDJ2_THEPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG83738.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
S36_SO-2_scaffold_243447_24
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists


25841..26545
DNA (705bp) protein (235aa)
Threonyl/alanyl tRNA synthetase SAD n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L5H7_KORCO
threonyl/alanyl tRNA synthetase SAD
Tax=CG_Micra_05
S36_SO-2_scaffold_243447_25
unknown

Not on your lists

26594..26776
DNA (183bp) protein (61aa)

This feature has no annotations

S36_SO-2_scaffold_243447_trna_1
unknown

Not on your lists

comp(26788..26871)
DNA (84bp)
transferRNA Leu
S36_SO-2_scaffold_243447_26
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

27271..28062
DNA (792bp) protein (264aa)
Uncharacterized protein id=5799956 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=AR15
S36_SO-2_scaffold_243447_27

Not on your lists

28059..28493
DNA (435bp) protein (145aa)
NUDIX hydrolase n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUG2_9ARCH
NUDIX hydrolase {ECO:0000313|EMBL:AIF21135.1}; TaxID=1456352 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_98_C03.;"
ADP-ribose pyrophosphatase
Displaying items 1-30 of 103 in total

View Taxonomy