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AB_1215_Bin_51.fna_scaffold_3517

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AB_1215_Bin_51.fna_scaffold_3517_1

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comp(1..1107)
DNA (1107bp) protein (369aa)
glycine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] id=5043649 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
AB_1215_Bin_51.fna_scaffold_3517_2
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

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comp(1109..2512)
DNA (1404bp) protein (468aa)
Thymidylate synthase complementing protein ThyX family protein id=1263813 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
thymidylate synthase complementing protein ThyX family protein
Tax=RBG_13_RIF_OD1_07_37_56_curated
AB_1215_Bin_51.fna_scaffold_3517_3
AR4, Woesearchaeaota, DPANN, Archaea

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2605..3153
DNA (549bp) protein (183aa)
transmembrane_regions id=5044053 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
AB_1215_Bin_51.fna_scaffold_3517_4

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comp(3155..3382)
DNA (228bp) protein (76aa)
UPF0235 protein MSWAN_0547 id=5799721 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61052.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
AB_1215_Bin_51.fna_scaffold_3517_5
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3379..4488)
DNA (1110bp) protein (370aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
Glutamate 5-kinase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MBE1_9EURY
glutamate 5-kinase
AB_1215_Bin_51.fna_scaffold_3517_6
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

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comp(4485..5726)
DNA (1242bp) protein (414aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00036508B0
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
AB_1215_Bin_51.fna_scaffold_3517_7

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comp(5723..6493)
DNA (771bp) protein (257aa)
proC; Pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2C2_9AQUI
Marine sediment metagenome DNA, contig: S01H1_S05363 {ECO:0000313|EMBL:GAG03789.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
AB_1215_Bin_51.fna_scaffold_3517_8
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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6710..7996
DNA (1287bp) protein (429aa)
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GI17_CALEA
Tax=RBG_16_Aminicenantes_63_16_curated
AB_1215_Bin_51.fna_scaffold_3517_9
unknown

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7983..8312
DNA (330bp) protein (110aa)

This feature has no annotations

AB_1215_Bin_51.fna_scaffold_3517_10
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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8314..9480
DNA (1167bp) protein (389aa)
Argininosuccinate lyase n=1 Tax=Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) RepID=D2C835_THENR
argininosuccinate lyase
Tax=RBG_16_Aminicenantes_63_16_curated
AB_1215_Bin_51.fna_scaffold_3517_11
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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comp(9569..10201)
DNA (633bp) protein (211aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR78594.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
hypothetical protein id=5048447 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
AB_1215_Bin_51.fna_scaffold_3517_12
CG_Woesearch_02, Woesearchaeota, Archaea

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10383..10736
DNA (354bp) protein (118aa)
rnp2; ribonuclease P protein component 2 (EC:3.1.26.5)
Ribonuclease P protein component 2 id=5046930 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=CG_Woesearch_02
AB_1215_Bin_51.fna_scaffold_3517_13
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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10754..11485
DNA (732bp) protein (244aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5046929 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Proteasome subunit alpha
Tax=RBG_13_Woesearchaeota_36_6_curated
AB_1215_Bin_51.fna_scaffold_3517_14
CG_Woesearch_02, Woesearchaeota, Archaea

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11491..12210
DNA (720bp) protein (240aa)
RNA-associated protein; K14574 ribosome maturation protein SDO1 id=5046928 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNA-associated protein
Tax=CG_Woesearch_02
AB_1215_Bin_51.fna_scaffold_3517_15

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12221..12916
DNA (696bp) protein (232aa)
rpr43; exosome RNA binding protein (EC:3.1.13.-); K03679 exosome complex component RRP4 id=5046927 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
putative exosome complex RNA-binding protein 1
AB_1215_Bin_51.fna_scaffold_3517_16

Not on your lists

12916..13629
DNA (714bp) protein (238aa)
3' exoribonuclease id=5800800 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
3' exoribonuclease {ECO:0000313|EMBL:AJF62130.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
exosome complex exonuclease Rrp41
AB_1215_Bin_51.fna_scaffold_3517_17
GWA2_OP11_46_7, Microgenomates, Bacteria

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13622..14413
DNA (792bp) protein (264aa)
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-); K12589 exosome complex component RRP42 id=5045737 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
3'-5' exoribonuclease {ECO:0000313|EMBL:KKU44649.1}; TaxID=1618502 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_46_7.;"
Ribosomal RNA-processing protein RRP42
AB_1215_Bin_51.fna_scaffold_3517_18
CG_Woesearch_01, Woesearchaeota, Archaea

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14403..14630
DNA (228bp) protein (76aa)
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] id=5045738 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Tax=CG_Woesearch_01
AB_1215_Bin_51.fna_scaffold_3517_19
AR18, Woesearchaeaota, DPANN, Archaea

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14627..14908
DNA (282bp) protein (94aa)
hypothetical protein; K09728 hypothetical protein id=5045726 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Tax=AR18
AB_1215_Bin_51.fna_scaffold_3517_20
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

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comp(14911..17403)
DNA (2493bp) protein (831aa)
Probable tRNA pseudouridine synthase B id=5799607 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Putative tRNA pseudouridine synthase B {ECO:0000313|EMBL:KKU47144.1}; Flags: Fragment;; TaxID=1618838 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
putative tRNA pseudouridine synthase B
AB_1215_Bin_51.fna_scaffold_3517_21
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(17405..17908)
DNA (504bp) protein (168aa)
ligand-binding protein SH3 n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A18A26
membrane protein
Tax=CG_Woesearch_02
AB_1215_Bin_51.fna_scaffold_3517_22
unknown

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comp(17905..18000)
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 22 items

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