ggKbase home page

gwa2_scaffold_256

Alias: GW2011_AR3_1

Search features with annotation key words

Displaying items 1-30 of 123 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwa2_scaffold_256_1

Not on your lists

1..333
DNA (333bp) protein (111aa)
Putative uncharacterized protein PH1731 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O59386_PYRHO
HemK-like protein {ECO:0000313|EMBL:KHO46553.1}; Flags: Fragment;; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
seg (db=Seg db_id=seg from=87 to=102)
gwa2_scaffold_256_2

Not on your lists

330..980
DNA (651bp) protein (217aa)
Uncharacterized protein (Fragment) n=1 Tax=Phytophthora ramorum RepID=H3H1A9_PHYRM
Uncharacterized protein {ECO:0000313|EMBL:KHO46554.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
seg (db=Seg db_id=seg from=185 to=194)
orthologues in the Eukaryote domain and Archaea Cindy Castelle (9/26/13)
gwa2_scaffold_256_3

Not on your lists

977..1279
DNA (303bp) protein (101aa)
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:KHO46555.1}; EC=2.1.1.63 {ECO:0000313|EMBL:KHO46555.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Methylated-DNA/protein-cysteine methyltransferase n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AMV2_METOI
cysteine methyltransferase
MGMT (db=PatternScan db_id=PS00374 from=50 to=56 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
gwa2_scaffold_256_4

Not on your lists

comp(1287..1772)
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46556.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=131 to=146)
gwa2_scaffold_256_5

Not on your lists

comp(1831..2760)
DNA (930bp) protein (310aa)
Transcription initiation factor IIB n=4 Tax=Archaeoglobaceae RepID=TF2B_ARCFU
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Transcription initiation factor IIB
seg (db=Seg db_id=seg from=287 to=298)
gwa2_scaffold_256_6

Not on your lists

2907..3110
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46558.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=2 to=14)
(db=HMMPfam db_id=PF03966 from=21 to=57 evalue=7.8e-06 interpro_id=IPR005651 interpro_description=Uncharacterised protein family UPF0434/Trm112)
gwa2_scaffold_256_7

Not on your lists

comp(3802..4170)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BTE4_METCG
Uncharacterized protein {ECO:0000313|EMBL:KHO46559.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
gwa2_scaffold_256_8

Not on your lists

4244..4582
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46560.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=68 to=82)
gwa2_scaffold_256_9

Not on your lists

comp(4735..5094)
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46561.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
(db=HMMPfam db_id=PF10049 from=5 to=52 evalue=3.7e-06 interpro_id=IPR019270 interpro_description=Protein of unknown function DUF2283)
gwa2_scaffold_256_10

Not on your lists

comp(5081..5410)
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46562.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=34 to=45)
gwa2_scaffold_256_11

Not on your lists

comp(5654..7453)
DNA (1800bp) protein (600aa)
GMP synthase glutamine-hydrolysing {ECO:0000313|EMBL:KHO46563.1}; EC=6.3.5.2 {ECO:0000313|EMBL:KHO46563.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
guaA; GMP synthase glutamine-hydrolysing (EC:6.3.5.2)
Bifunctional GMP synthase/glutamine amidotransferase protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKP8_9BACT
coiled-coil (db=Coil db_id=coil from=459 to=480 evalue=NA)
GMP synthase found in Eukaryote and bacteria Cindy Castelle (9/26/13)
gwa2_scaffold_256_12

Not on your lists

comp(7518..9011)
DNA (1494bp) protein (498aa)
Thymidine phosphorylase {ECO:0000313|EMBL:KHO46564.1}; EC=2.4.2.4 {ECO:0000313|EMBL:KHO46564.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Putative thymidine phosphorylase n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LMM0_THEBM
AMP phosphohydrolase
seg (db=Seg db_id=seg from=267 to=278)
gwa2_scaffold_256_13

Not on your lists

comp(9027..10082)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Thermodesulfobacterium sp. (strain OPB45) RepID=F8C235_THESO
Uncharacterized protein {ECO:0000313|EMBL:KHO46565.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
seg (db=Seg db_id=seg from=9 to=25)
gwa2_scaffold_256_14

Not on your lists

comp(10149..10649)
DNA (501bp) protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46566.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=42 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
gwa2_scaffold_256_15

Not on your lists

comp(10902..12839)
DNA (1938bp) protein (646aa)
Sodium/hydrogen exchanger n=1 Tax=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) RepID=A6URJ7_METVS
Sodium/hydrogen exchanger {ECO:0000313|EMBL:KHO46567.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
seg (db=Seg db_id=seg from=3 to=25)
gwa2_scaffold_256_16

Not on your lists

comp(13145..15748)
DNA (2604bp) protein (868aa)
Ca2+-transporting ATPase {ECO:0000313|EMBL:KHO46568.1}; EC=3.6.3.8 {ECO:0000313|EMBL:KHO46568.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Calcium-translocating P-type ATPase, PMCA-type n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LVI5_TEPAE
hypothetical protein
CATION-TRANSPORTING ATPASE, E1-E2 FAMILY (db=HMMPanther db_id=PTHR11939:SF85 from=20 to=735 evalue=0.0)
gwa2_scaffold_256_17

Not on your lists

comp(15809..16687)
DNA (879bp) protein (293aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46569.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=155 to=168)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=166)
(db=HMMPfam db_id=PF02631 from=9 to=95 evalue=1.2e-05 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
gwa2_scaffold_256_18

Not on your lists

comp(16724..17074)
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46570.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
gwa2_scaffold_256_19

Not on your lists

17850..18788
DNA (939bp) protein (313aa)
putative UDP-glucose 4-epimerase (EC:5.1.3.2)
Putative UDP-glucose 4-epimerase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N595_ANATU
Uncharacterized protein {ECO:0000313|EMBL:KHO46571.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=73 to=83)
gwa2_scaffold_256_20

Not on your lists

19095..19721
DNA (627bp) protein (209aa)
CAAX prenyl protease-related protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9B7_SINAD
Uncharacterized protein {ECO:0000313|EMBL:KHO46572.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
CAAX prenyl protease-related protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
gwa2_scaffold_256_21

Not on your lists

19810..22242
DNA (2433bp) protein (811aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46573.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=14 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
gwa2_scaffold_256_22

Not on your lists

22235..22600
DNA (366bp) protein (122aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46574.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=4 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
(db=HMMPfam db_id=PF07760 from=7 to=64 evalue=4.9e-08 interpro_id=IPR011674 interpro_description=Domain of unknown function DUF1616)
gwa2_scaffold_256_23

Not on your lists

22737..23717
DNA (981bp) protein (327aa)
UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase {ECO:0000313|EMBL:KHO46575.1}; EC=2.7.8.15 {ECO:0000313|EMBL:KHO46575.1};; TaxID=1579365 species="Archaea.;" source="ar
UDP-N-acetylglucosamine-1-phosphate transferase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4M9J1_9EURY
UDP-N-acetylglucosamine-1-phosphate transferase
seg (db=Seg db_id=seg from=54 to=75)
gwa2_scaffold_256_24

Not on your lists

23739..24974
DNA (1236bp) protein (412aa)
ATP-grasp enzyme-like n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LGV2_SYNFM
ATP-grasp protein-like protein {ECO:0000313|EMBL:KHO46576.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
ATP-grasp protein-like protein
UREA AMIDOLYASE (db=HMMPanther db_id=PTHR18866:SF14 from=11 to=48 evalue=0.00033)
gwa2_scaffold_256_25

Not on your lists

24917..25993
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J0S8D6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHO46577.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
(db=HMMPfam db_id=PF04007 from=16 to=333 evalue=1.4e-26 interpro_id=IPR007152 interpro_description=Protein of unknown function DUF354)
gwa2_scaffold_256_26

Not on your lists

25990..26448
DNA (459bp) protein (153aa)
Maltose O-acetyltransferase (EC:2.3.1.79)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46GF5_METBF
Uncharacterized protein {ECO:0000313|EMBL:KHO46578.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=141 to=152)
gwa2_scaffold_256_27

Not on your lists

26445..27566
DNA (1122bp) protein (374aa)
Glycosyl transferase group 1 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2V4_SPHTD
Group 1 glycosyl transferase {ECO:0000313|EMBL:KHO46579.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
group 1 glycosyl transferase
(db=HMMPfam db_id=PF00534 from=190 to=353 evalue=1.8e-30 interpro_id=IPR001296 interpro_description=Glycosyl transferase, family 1 GO=Biological Process: biosynthetic process (GO:0009058))
gwa2_scaffold_256_28

Not on your lists

27616..29754
DNA (2139bp) protein (713aa)
Candidate b-glycosyltransferase, Glycosyltransferase Family 2 n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0F0_RAMTT
B-glycosyltransferase {ECO:0000313|EMBL:KHO46580.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
b-glycosyltransferase
seg (db=Seg db_id=seg from=67 to=90)
gwa2_scaffold_256_29

Not on your lists

29764..31899
DNA (2136bp) protein (712aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO46581.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
seg (db=Seg db_id=seg from=9 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwa2_scaffold_256_30

Not on your lists

31896..33260
DNA (1365bp) protein (455aa)
Phenylacetate-CoA ligase {ECO:0000313|EMBL:KHO46582.1}; EC=6.2.1.30 {ECO:0000313|EMBL:KHO46582.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Capsular polysaccharide biosynthesis protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TBN4_METSL
capsular polysaccharide biosynthesis protein
seg (db=Seg db_id=seg from=40 to=51)
Displaying items 1-30 of 123 in total

View Taxonomy