ggKbase home page

gwa2_scaffold_135

Alias: GW2011_AR4_1

Search features with annotation key words

Displaying items 1-30 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwa2_scaffold_135_1
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(458..1207)
DNA (750bp) protein (250aa)
RsuA; 16S rRNA uridine-516 pseudouridylate synthase; K06183 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] Tax=AR4
Pseudouridine synthase n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R5V5_THETN
RsuA; 16S rRNA uridine-516 pseudouridylate synthase
PSI_RSU (db=PatternScan db_id=PS01149 from=109 to=123 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
gwa2_scaffold_135_2
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

1274..1963
DNA (690bp) protein (230aa)
oxidoreductase FAD-binding subunit; K00351 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-] Tax=AR4
Oxidoreductase FAD-binding domain protein n=1 Tax=Thermosipho melanesiensis (strain BI429 / DSM 12029) RepID=A6LKR1_THEM4
oxidoreductase FAD-binding subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=132)
gwa2_scaffold_135_3
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

2084..2536
DNA (453bp) protein (151aa)
Tax=AR4
gwa2_scaffold_135_4
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

2733..3284
DNA (552bp) protein (184aa)
seg Tax=AR4
seg (db=Seg db_id=seg from=67 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
coiled-coil (db=Coil db_id=coil from=101 to=129 evalue=NA)
gwa2_scaffold_135_5
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(3377..4396)
DNA (1020bp) protein (340aa)
Tax=AR4
gwa2_scaffold_135_6
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(4642..5151)
DNA (510bp) protein (170aa)
Tax=AR4
gwa2_scaffold_135_7

Not on your lists

comp(5256..5792)
DNA (537bp) protein (179aa)
Peptidyl-prolyl cis-trans isomerase n=3 Tax=Veillonellaceae RepID=F5RLU3_9FIRM
Cyclophilin type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:KHO47171.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
cyclophilin type peptidyl-prolyl cis-trans isomerase
seg (db=Seg db_id=seg from=79 to=91)
gwa2_scaffold_135_8
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

5846..6475
DNA (630bp) protein (210aa)
Protein dedA (Protein DSG-1) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMI9_9BACT
hypothetical protein; K03975 membrane-associated protein Tax=AR4
dedA; protein dedA (Protein DSG-1)
seg (db=Seg db_id=seg from=48 to=61)
gwa2_scaffold_135_9

Not on your lists

comp(6664..9462)
DNA (2799bp) protein (933aa)
Dolichyl-diphosphooligosaccharide-protein glycosyltransferase {ECO:0000313|EMBL:KHO47173.1}; EC=2.4.99.18 {ECO:0000313|EMBL:KHO47173.1};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.
STT3 n=1 Tax=Methanococcus voltae RepID=Q2EMT4_METVO
Oligosaccharyl transferase STT3 subunit
seg (db=Seg db_id=seg from=21 to=40)
gwa2_scaffold_135_10
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

9535..10170
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CZ5_SOLUE
hypothetical protein Tax=AR4
hypothetical protein
seg (db=Seg db_id=seg from=53 to=64)
gwa2_scaffold_135_11
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10236..10688)
DNA (453bp) protein (151aa)
hypothetical protein
Tax=AR4
gwa2_scaffold_135_12
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10685..11233)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W213_UNCMA
hypothetical protein Tax=AR4
hypothetical protein
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=80 to=182 evalue=1.1e-09)
gwa2_scaffold_135_13
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11521..11802)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=2 Tax=Candidatus Parvarchaeum RepID=D2EGD5_9EURY
Putative uncharacterized protein Tax=AR4
hypothetical protein
(db=HMMPfam db_id=PF05239 from=5 to=76 evalue=3.0e-05 interpro_id=IPR007903 interpro_description=PRC-barrel)
gwa2_scaffold_135_14
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

12073..12750
DNA (678bp) protein (226aa)
TraB family protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VSP1_METIM
TraB family protein Tax=AR4
TraB family protein
(db=HMMPfam db_id=PF01963 from=3 to=218 evalue=1.7e-54 interpro_id=IPR002816 interpro_description=Pheromone shutdown, TraB)
gwa2_scaffold_135_15
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

12937..13716
DNA (780bp) protein (260aa)
Peptidase M50 Tax=AR4
seg (db=Seg db_id=seg from=159 to=170)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=41)
(db=HMMPfam db_id=PF02163 from=60 to=206 evalue=4.6e-06 interpro_id=IPR008915 interpro_description=Peptidase M50 GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
gwa2_scaffold_135_16
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

13718..14035
DNA (318bp) protein (106aa)
seg Tax=AR4
seg (db=Seg db_id=seg from=23 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=47)
gwa2_scaffold_135_17
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

14095..16302
DNA (2208bp) protein (736aa)
Hef nuclease n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZQN5_THELI
Hef nuclease; K10896 fanconi anemia group M protein Tax=AR4
Hef nuclease
seg (db=Seg db_id=seg from=345 to=367)
gwa2_scaffold_135_18
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

16308..16541
DNA (234bp) protein (78aa)
seg Tax=AR4
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwa2_scaffold_135_19
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

16718..17329
DNA (612bp) protein (204aa)
Nucleotidyl transferase domain Tax=AR4
seg (db=Seg db_id=seg from=24 to=36)
(db=HMMPfam db_id=PF01909 from=93 to=167 evalue=1.9e-09 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=81 to=180 evalue=1.3e-13)
gwa2_scaffold_135_20
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

17322..17801
DNA (480bp) protein (160aa)
HEPN Tax=AR4
(db=HMMPfam db_id=PF05168 from=39 to=109 evalue=4.7e-06 interpro_id=IPR007842 interpro_description=HEPN)
gwa2_scaffold_135_21
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(17807..18145)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) RepID=C1DWG6_SULAA
hypothetical protein Tax=AR4
Toprim protein
Toprim domain (db=superfamily db_id=SSF110455 from=3 to=108 evalue=1.5e-08)
gwa2_scaffold_135_22
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

18199..19545
DNA (1347bp) protein (449aa)
hypothetical protein; K00992 [EC:2.7.7.-] Tax=AR4
Putative uncharacterized protein n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVD0_9EURY
hypothetical protein
seg (db=Seg db_id=seg from=421 to=440)
gwa2_scaffold_135_23

Not on your lists


19851..20819
DNA (969bp) protein (323aa)
50S ribosomal protein L3 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE66_ARCPA
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
50S ribosomal protein L3
seg (db=Seg db_id=seg from=110 to=122)
gwa2_scaffold_135_24

Not on your lists

20854..21624
DNA (771bp) protein (257aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ
50S ribosomal protein L4P, large subunit ribosomal protein L4e {ECO:0000313|EMBL:AJS11883.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
seg (db=Seg db_id=seg from=49 to=60)
gwa2_scaffold_135_25
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

21626..21877
DNA (252bp) protein (84aa)
50S ribosomal protein L23P n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L706_KORCO
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=AR4
50S ribosomal protein L23P
60S RIBOSOMAL PROTEIN L23A (db=HMMPanther db_id=PTHR11620 from=3 to=83 evalue=2.8e-19)
gwa2_scaffold_135_26
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists


21984..22463
DNA (480bp) protein (160aa)
50S ribosomal protein L2 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE63_ARCPA
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=AR4
50S ribosomal protein L2
60S RIBOSOMAL PROTEIN L8 (db=HMMPanther db_id=PTHR13691:SF4 from=1 to=158 evalue=1.0e-48)
gwa2_scaffold_135_27

Not on your lists

22465..22848
DNA (384bp) protein (128aa)
30S ribosomal protein S19P n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSU7_ARCVS
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
30S ribosomal protein S19
seg (db=Seg db_id=seg from=119 to=127)
gwa2_scaffold_135_28
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

22845..23384
DNA (540bp) protein (180aa)
50S ribosomal protein L22P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZC3_METFV
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=AR4
50S ribosomal protein L22
seg (db=Seg db_id=seg from=152 to=163)
gwa2_scaffold_135_29
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists


23377..24039
DNA (663bp) protein (221aa)
30S ribosomal protein S3 n=2 Tax=Thermococcus RepID=RS3_THESM
rps3p; 30S ribosomal protein S3P; K02982 small subunit ribosomal protein S3 Tax=AR4
30S ribosomal protein S3
seg (db=Seg db_id=seg from=199 to=220)
gwa2_scaffold_135_30
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists


24036..24233
DNA (198bp) protein (66aa)
Ribosomal protein L29 Tax=AR4
RIBOSOMAL_L29 (db=PatternScan db_id=PS00579 from=40 to=54 evalue=0.0 interpro_id=IPR018254 interpro_description=Ribosomal protein L29, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
coiled-coil (db=Coil db_id=coil from=4 to=32 evalue=NA)
(db=HMMPfam db_id=PF00831 from=4 to=56 evalue=1.2e-13 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 188 in total

View Taxonomy