ggKbase home page

AB_1215_Bin_111.fna_scaffold_7882

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AB_1215_Bin_111.fna_scaffold_7882_1
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3..977
DNA (975bp) protein (325aa)
Dead box RNA helicase n=2 Tax=Methanococcoides burtonii RepID=Q12UP5_METBU
DEAD/DEAH box helicase-like protein
DEAD-box RNA helicase {ECO:0000313|EMBL:AAF89099.1}; TaxID=29291 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii.;"
AB_1215_Bin_111.fna_scaffold_7882_2
unknown

Not on your lists

1108..1380
DNA (273bp) protein (91aa)

This feature has no annotations

AB_1215_Bin_111.fna_scaffold_7882_3

Not on your lists


comp(1405..2058)
DNA (654bp) protein (218aa)
Marine sediment metagenome DNA, contig: S03H2_L00255 {ECO:0000313|EMBL:GAH34612.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Diphthamide biosynthesis enzyme Dph2 id=5799580 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
diphthamide biosynthesis protein
AB_1215_Bin_111.fna_scaffold_7882_4
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(2104..2952)
DNA (849bp) protein (283aa)
hypothetical protein id=5046593 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_01
AB_1215_Bin_111.fna_scaffold_7882_5
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(2949..3884)
DNA (936bp) protein (312aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] id=5045837 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ATPase
Tax=CG_Woesearch_01
AB_1215_Bin_111.fna_scaffold_7882_6
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(3903..4691)
DNA (789bp) protein (263aa)
id=5046591 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_7
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(4695..5195)
DNA (501bp) protein (167aa)
hypothetical protein id=5046590 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(5222..5635)
DNA (414bp) protein (138aa)
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_9
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(5662..7902)
DNA (2241bp) protein (747aa)
mg-chelatase subunit chld id=5046589 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
mg-chelatase subunit chld
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(8058..9818)
DNA (1761bp) protein (587aa)
hypothetical protein id=5046588 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(9891..10508)
DNA (618bp) protein (206aa)
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_12
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

10553..11155
DNA (603bp) protein (201aa)
Putative uncharacterized protein PH0730 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O58461_PYRHO
hypothetical protein
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(11139..11936)
DNA (798bp) protein (266aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] id=5240603 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_14
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(11933..12505)
DNA (573bp) protein (191aa)
Prolyl-tRNA synthetase suspected. See adjacent gene [AB_1215_Bin_111.fna_scaffold_7882_13].
Tax=CG_Woesearch_02
Bifunctional aminoacyl-tRNA synthetase (Fragment) id=5800815 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
proS; Proline--tRNA ligase (EC:6.1.1.15)
AB_1215_Bin_111.fna_scaffold_7882_trna_1
unknown

Not on your lists

12790..12873
DNA (84bp)
transferRNA Leu
AB_1215_Bin_111.fna_scaffold_7882_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(12888..14315)
DNA (1428bp) protein (476aa)
putative efflux protein, MATE family id=5090695 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
MATE efflux family protein
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(14358..15059)
DNA (702bp) protein (234aa)
DNA alkylation repair enzyme superfamily id=5094342 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
DNA alkylation repair enzyme
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_17
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(15064..15669)
DNA (606bp) protein (202aa)
Alpha-ribazole phosphatase n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KC12_HALHC
alpha-ribazole phosphatase
Tax=AR11
AB_1215_Bin_111.fna_scaffold_7882_18
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(15712..15927)
DNA (216bp) protein (72aa)
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(15930..16487)
DNA (558bp) protein (186aa)
Metal-dependent phosphohydrolase, HD subdomain n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q099G6_STIAU id=68930 bin=ACD49 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
putative hydrolase of HD superfamily
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_20
unknown

Not on your lists

comp(16689..17459)
DNA (771bp) protein (257aa)

This feature has no annotations

AB_1215_Bin_111.fna_scaffold_7882_21
unknown

Not on your lists

comp(17796..17912)
DNA (117bp) protein (39aa)

This feature has no annotations

AB_1215_Bin_111.fna_scaffold_7882_22
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(17944..18225)
DNA (282bp) protein (94aa)
DNA/RNA-binding protein Alba; K03622 archaea-specific DNA-binding protein id=5043654 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA-binding protein Alba
Tax=RBG_13_Woesearchaeota_36_6_curated
AB_1215_Bin_111.fna_scaffold_7882_23
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(18259..18453)
DNA (195bp) protein (65aa)
30S ribosomal protein S17e id=5800746 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
SSU ribosomal protein S17E
Tax=CG_Woesearch_02
AB_1215_Bin_111.fna_scaffold_7882_24
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(18526..19320)
DNA (795bp) protein (265aa)
Arginase id=5799599 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Arginase
Tax=CG_Woesearch_02
Displaying 25 items

View Taxonomy