ggKbase home page

AB_1215_Bin_59.fna_scaffold_1587

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AB_1215_Bin_59.fna_scaffold_1587_1

Not on your lists

2..394
DNA (393bp) protein (131aa)
ABC transporter ATP-binding protein id=5800339 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJF61670.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
RNase L inhibitor
AB_1215_Bin_59.fna_scaffold_1587_2
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

569..1399
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WU1_METBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE52085.1}; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
AB_1215_Bin_59.fna_scaffold_1587_3
Ferroplasma sp. Type II, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

1396..2163
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Ferroplasma sp. Type II RepID=T0MDK0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EQB74408.1}; TaxID=261388 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma; environmental samples.;" source="Ferroplasma sp. Type II.;"
hypothetical protein
AB_1215_Bin_59.fna_scaffold_1587_4

Not on your lists


2326..3372
DNA (1047bp) protein (349aa)
Protein pelota homolog {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00004956}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00011872};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
protein pelota
Pelota-like protein; K06965 protein pelota id=5241688 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
AB_1215_Bin_59.fna_scaffold_1587_5
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

3416..4981
DNA (1566bp) protein (522aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
glutamine amidotransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14] id=5240812 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_1215_Bin_59.fna_scaffold_1587_6
CG_Omnitr_02, Omnitrophica, Bacteria

Not on your lists

5096..6460
DNA (1365bp) protein (455aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDB1_DESAR
Tax=CG_Omnitr_02
AB_1215_Bin_59.fna_scaffold_1587_7
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(6496..6855)
DNA (360bp) protein (120aa)
Holliday junction resolvase
Holliday junction resolvase id=5241687 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_1215_Bin_59.fna_scaffold_1587_8
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(6893..7294)
DNA (402bp) protein (134aa)
hypothetical protein
id=5241686 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_1215_Bin_59.fna_scaffold_1587_9
unknown

Not on your lists

comp(7368..7673)
DNA (306bp) protein (102aa)

This feature has no annotations

AB_1215_Bin_59.fna_scaffold_1587_10

Not on your lists

comp(7700..9211)
DNA (1512bp) protein (504aa)
elongator complex protein 3 (EC:2.3.1.48)
histone acetyltransferase, ELP3 family (EC:2.3.1.48); K07739 elongator complex protein 3 [EC:2.3.1.48] id=5241684 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Elongator complex protein 3 {ECO:0000313|EMBL:AJF60675.1}; EC=2.3.1.48 {ECO:0000313|EMBL:AJF60675.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_1215_Bin_59.fna_scaffold_1587_11

Not on your lists

comp(9231..10010)
DNA (780bp) protein (260aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55724.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
hypothetical protein
transmembrane_regions id=5241683 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
AB_1215_Bin_59.fna_scaffold_1587_12
Methanothermobacter thermautotrophicus, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

10062..10703
DNA (642bp) protein (214aa)
Conserved protein n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=O27910_METTH
hypothetical protein
Conserved protein {ECO:0000313|EMBL:AAB86348.1}; TaxID=187420 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 /; JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium; thermoautotrophicum).;"
AB_1215_Bin_59.fna_scaffold_1587_13
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

10682..11305
DNA (624bp) protein (208aa)
hypothetical protein
hypothetical protein id=5241682 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_1215_Bin_59.fna_scaffold_1587_14

Not on your lists

comp(11372..12931)
DNA (1560bp) protein (520aa)
Archaeal flagellar protein FlaI {ECO:0000313|EMBL:KHO55726.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
archaeal flagellar protein FlaI
secretory protein kinase; K07332 archaeal flagellar protein FlaI id=5241680 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
AB_1215_Bin_59.fna_scaffold_1587_15

Not on your lists


12998..14386
DNA (1389bp) protein (463aa)
tRNA nucleotidyltransferase CCA-adding enzyme (EC:2.7.7.72)
CCA-adding enzyme (EC:2.7.7.72); K07558 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] id=5241679 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01264}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_1215_Bin_59.fna_scaffold_1587_16
CG_Micra_02, Micraarchaeota, Archaea

Not on your lists

comp(14389..14616)
DNA (228bp) protein (76aa)
Hypothetical conserved protein id=4655328 bin=GWF2_Bacteroidetes_35_48 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
hypothetical protein
Tax=CG_Micra_02
AB_1215_Bin_59.fna_scaffold_1587_17
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

Not on your lists

comp(14609..14830)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TIM2_METAC
Uncharacterized protein {ECO:0000313|EMBL:KKQ18814.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
hypothetical protein
AB_1215_Bin_59.fna_scaffold_1587_18
Halanaerobium praevalens, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14884..15297)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) RepID=E3DLU3_HALPG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO77290.1}; TaxID=572479 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL).;"
AB_1215_Bin_59.fna_scaffold_1587_19

Not on your lists

comp(15304..15885)
DNA (582bp) protein (194aa)
acetyltransferase id=5042239 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Acetyltransferase {ECO:0000313|EMBL:KHO48190.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
acetyltransferase
AB_1215_Bin_59.fna_scaffold_1587_trna_1
unknown

Not on your lists

comp(15887..15958)
DNA (72bp)
transferRNA Arg
AB_1215_Bin_59.fna_scaffold_1587_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

16104..16259
DNA (156bp) protein (52aa)
Zn-ribbon RNA-binding protein n=1 Tax=mine drainage metagenome RepID=T0ZGQ7_9ZZZZ
hypothetical protein
Tax=CG_Woesearch_02
AB_1215_Bin_59.fna_scaffold_1587_21
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

16260..16538
DNA (279bp) protein (93aa)
hypothetical protein
Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange id=5241677 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_1215_Bin_59.fna_scaffold_1587_22

Not on your lists

16625..18688
DNA (2064bp) protein (688aa)
exonuclease SbcC
exonuclease sbcc; K03546 exonuclease SbcC id=5241675 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Exonuclease SbcC {ECO:0000313|EMBL:AJF60666.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_1215_Bin_59.fna_scaffold_1587_23
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(18690..19871)
DNA (1182bp) protein (394aa)
Transposase, IS605 OrfB family n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGP6_9EURY
transposase, IS605 OrfB family, central region
Tax=CG_Woesearch_02
AB_1215_Bin_59.fna_scaffold_1587_24

Not on your lists

comp(20242..20433)
DNA (192bp) protein (64aa)
hypothetical protein
Ribosomal protein S17e id=5241674 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S17e {ECO:0000256|SAAS:SAAS00278999}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_1215_Bin_59.fna_scaffold_1587_25

Not on your lists

comp(20442..20645)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55733.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
DNA-directed RNA polymerase subunit K
DNA-directed RNA polymerase subunit K id=5241673 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
AB_1215_Bin_59.fna_scaffold_1587_26
unknown

Not on your lists

comp(20737..21120)
DNA (384bp) protein (128aa)

This feature has no annotations

AB_1215_Bin_59.fna_scaffold_1587_27
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21335..22099)
DNA (765bp) protein (255aa)
Glycosyl transferase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L176_METHD
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:AGB50153.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
AB_1215_Bin_59.fna_scaffold_1587_28
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

comp(22243..22560)
DNA (318bp) protein (106aa)
Tax=CG_Micra_04
AB_1215_Bin_59.fna_scaffold_1587_29
CG_Micra_01, Micraarchaeota, Archaea

Not on your lists

comp(22564..22785)
DNA (222bp) protein (74aa)
Tax=CG_Micra_01
Displaying items 1-30 of 45 in total

View Taxonomy