ggKbase home page

AB_3033_bin_152_scaffold_2268

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AB_3033_bin_152_scaffold_2268_1
R_OD1_Yanofskybacteria_41_29, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

2..151
DNA (150bp) protein (50aa)
Putative uncharacterized protein n=1 Tax=Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) RepID=D5V1M3_ARCNC
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_29_curated
AB_3033_bin_152_scaffold_2268_2
unknown

Not on your lists

comp(510..1211)
DNA (702bp) protein (234aa)

This feature has no annotations

AB_3033_bin_152_scaffold_2268_3

Not on your lists


1315..3870
DNA (2556bp) protein (852aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
alaS; alanine--tRNA ligase/alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase id=5799660 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
AB_3033_bin_152_scaffold_2268_4

Not on your lists

3929..4879
DNA (951bp) protein (317aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A8J9_THEID
Marine sediment metagenome DNA, contig: S06H3_C02995 {ECO:0000313|EMBL:GAH98397.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NAD-dependent epimerase/dehydratase
AB_3033_bin_152_scaffold_2268_5
unknown

Not on your lists

4926..5675
DNA (750bp) protein (250aa)

This feature has no annotations

AB_3033_bin_152_scaffold_2268_6

Not on your lists


5715..8447
DNA (2733bp) protein (911aa)
leucyl-tRNA synthetase (EC:6.1.1.4)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=5240720 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_3033_bin_152_scaffold_2268_7
unknown

Not on your lists

comp(8451..8876)
DNA (426bp) protein (142aa)

This feature has no annotations

AB_3033_bin_152_scaffold_2268_8
bacterium UASB270, Bacteria

Not on your lists

8955..9947
DNA (993bp) protein (331aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QU91_CHLT3
glyceraldehyde-3-phosphate dehydrogenase
AB_3033_bin_152_scaffold_2268_9
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9951..11387)
DNA (1437bp) protein (479aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:AEG15654.1}; EC=2.7.6.5 {ECO:0000313|EMBL:AEG15654.1};; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CNF9_DESK7
AB_3033_bin_152_scaffold_2268_10
R_OD1_Falkowbacteria_39_33, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11426..13126)
DNA (1701bp) protein (567aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000369E28D
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Falkowbacteria_39_33_curated
AB_3033_bin_152_scaffold_2268_11
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13157..14017)
DNA (861bp) protein (287aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000313|EMBL:AIF47501.1}; EC=2.7.2.8 {ECO:0000313|EMBL:AIF47501.1};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
acetylglutamate kinase n=1 Tax=Dyella japonica RepID=UPI00037DB059
AB_3033_bin_152_scaffold_2268_12
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14002..14961)
DNA (960bp) protein (320aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 /; V24 S).;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWN8_METFV
AB_3033_bin_152_scaffold_2268_13
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(14963..16132)
DNA (1170bp) protein (390aa)
acetylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYF0_METFV
Tax=RBG_16_RIF03_38_10_curated
AB_3033_bin_152_scaffold_2268_14
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16145..17473)
DNA (1329bp) protein (443aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BFX2_THEXL
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
AB_3033_bin_152_scaffold_2268_15
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

17514..18146
DNA (633bp) protein (211aa)
hypothetical protein id=5048447 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=GWA2_WOR_2_47_8_curated
AB_3033_bin_152_scaffold_2268_16
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(18149..18520)
DNA (372bp) protein (124aa)
hypothetical protein
transmembrane_regions id=5240731 bin=GW2011_AR10_complete species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_3033_bin_152_scaffold_2268_trna_2
unknown

Not on your lists

comp(18601..18675)
DNA (75bp)
transferRNA Arg
AB_3033_bin_152_scaffold_2268_17
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18718..19722)
DNA (1005bp) protein (335aa)
Fe-S oxidoreductase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VGT1_CLOSH
putative Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:AGC67160.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
AB_3033_bin_152_scaffold_2268_18
unknown

Not on your lists

comp(19793..20311)
DNA (519bp) protein (173aa)

This feature has no annotations

AB_3033_bin_152_scaffold_2268_19

Not on your lists

20362..21150
DNA (789bp) protein (263aa)
SPFH protein
SPFH domain-containing protein id=5240725 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
SPFH protein {ECO:0000313|EMBL:AJF59718.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_3033_bin_152_scaffold_2268_20
unknown

Not on your lists

21253..21486
DNA (234bp) protein (78aa)

This feature has no annotations

AB_3033_bin_152_scaffold_2268_21
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21523..22074)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00037711B6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB50390.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
AB_3033_bin_152_scaffold_2268_22
unknown

Not on your lists

22106..22237
DNA (132bp) protein (44aa)

This feature has no annotations

AB_3033_bin_152_scaffold_2268_23
unknown

Not on your lists

22237..22389
DNA (153bp) protein (51aa)

This feature has no annotations

AB_3033_bin_152_scaffold_2268_24
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

22386..23195
DNA (810bp) protein (270aa)
id=5048843 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=CG_Pacearch_05
AB_3033_bin_152_scaffold_2268_trna_1
unknown

Not on your lists

23186..23299
DNA (114bp)
transferRNA Leu
AB_3033_bin_152_scaffold_2268_25
GWA2_OD1_43_15, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(23389..23961)
DNA (573bp) protein (191aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT00236.1}; TaxID=1618738 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_43_15.;"
AB_3033_bin_152_scaffold_2268_26
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(24032..24442)
DNA (411bp) protein (137aa)
HIT family hydrolase n=1 Tax=Desulfovibrio longus RepID=UPI0003B51C60
histidine triad (HIT) protein
Tax=CG_Woesearch_02
AB_3033_bin_152_scaffold_2268_27
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

24533..27520
DNA (2988bp) protein (996aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ06950.1}; TaxID=1618713 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE2_36_40.;"
id=2487824 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
hypothetical protein
Displaying 29 items

View Taxonomy